Literature DB >> 15654757

Influence of flanking residues on tilt and rotation angles of transmembrane peptides in lipid bilayers. A solid-state 2H NMR study.

Suat Ozdirekcan1, Dirk T S Rijkers, Rob M J Liskamp, J Antoinette Killian.   

Abstract

To gain insight into the parameters that determine the arrangement of proteins in membranes, (2)H NMR experiments were performed to analyze tilt and rotation angles of membrane-spanning alpha-helical model peptides upon incorporation in diacylphosphatidylcholine bilayers with varying thickness. The peptides consisted of the sequence acetyl-GW(2)(LA)(8)LW(2)A-NH(2) (WALP23) and analogues thereof, in which the interfacial Trp residues were replaced by Lys (KALP23) and/or the hydrophobic sequence was replaced by Leu (WLP23 and KLP23). The peptides were synthesized with a single deuterium-labeled alanine at four different positions along the hydrophobic segment. For all peptides a small but systematic increase in tilt angle was observed upon decreasing the bilayer thickness. However, significantly larger tilt angles were obtained for the Lys-flanked KALP23 than for the Trp-flanked WALP23, suggesting that interfacial anchoring interactions of Trp may inhibit tilting. Increasing the hydrophobicity resulted in an increase in tilt angle for the Trp-flanked analogue only. For all peptides the maximum tilt angle obtained was remarkably small (less than 12 degrees ), suggesting that further tilting is inhibited, most likely due to unfavorable packing of lipids around a tilted helix. The results furthermore showed that the direction of tilt is determined almost exclusively by the flanking residues: Trp- and Lys-flanked peptides were found to have very different rotation angles, which were influenced significantly neither by hydrophobicity of the peptides nor by the extent of hydrophobic mismatch. Finally, very small changes in the side chain angles of the deuterated alanine probes were observed in Trp-flanked peptides, suggesting that these peptides may decrease their hydrophobic length to help them to adapt to thin membranes.

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Year:  2005        PMID: 15654757     DOI: 10.1021/bi0481242

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  39 in total

1.  Interpretation of 2H-NMR experiments on the orientation of the transmembrane helix WALP23 by computer simulations.

Authors:  Luca Monticelli; D Peter Tieleman; Patrick F J Fuchs
Journal:  Biophys J       Date:  2010-09-08       Impact factor: 4.033

2.  Revisiting hydrophobic mismatch with free energy simulation studies of transmembrane helix tilt and rotation.

Authors:  Taehoon Kim; Wonpil Im
Journal:  Biophys J       Date:  2010-07-07       Impact factor: 4.033

3.  Order parameters of a transmembrane helix in a fluid bilayer: case study of a WALP peptide.

Authors:  Andrea Holt; Léa Rougier; Valérie Réat; Franck Jolibois; Olivier Saurel; Jerzy Czaplicki; J Antoinette Killian; Alain Milon
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

4.  Solid-state NMR analysis of the PGLa peptide orientation in DMPC bilayers: structural fidelity of 2H-labels versus high sensitivity of 19F-NMR.

Authors:  Erik Strandberg; Parvesh Wadhwani; Pierre Tremouilhac; Ulrich H N Dürr; Anne S Ulrich
Journal:  Biophys J       Date:  2005-12-09       Impact factor: 4.033

5.  Molecular dynamics simulations of model trans-membrane peptides in lipid bilayers: a systematic investigation of hydrophobic mismatch.

Authors:  Senthil K Kandasamy; Ronald G Larson
Journal:  Biophys J       Date:  2006-01-20       Impact factor: 4.033

6.  Characterization of the resting MscS: modeling and analysis of the closed bacterial mechanosensitive channel of small conductance.

Authors:  Andriy Anishkin; Bradley Akitake; Sergei Sukharev
Journal:  Biophys J       Date:  2007-11-02       Impact factor: 4.033

7.  Effect of sequence hydrophobicity and bilayer width upon the minimum length required for the formation of transmembrane helices in membranes.

Authors:  Shyam S Krishnakumar; Erwin London
Journal:  J Mol Biol       Date:  2007-09-20       Impact factor: 5.469

8.  The dynamic orientation of membrane-bound peptides: bridging simulations and experiments.

Authors:  Santi Esteban-Martín; Jesús Salgado
Journal:  Biophys J       Date:  2007-08-24       Impact factor: 4.033

9.  Orientation and dynamics of peptides in membranes calculated from 2H-NMR data.

Authors:  Erik Strandberg; Santi Esteban-Martín; Jesús Salgado; Anne S Ulrich
Journal:  Biophys J       Date:  2009-04-22       Impact factor: 4.033

10.  Helical distortion in tryptophan- and lysine-anchored membrane-spanning alpha-helices as a function of hydrophobic mismatch: a solid-state deuterium NMR investigation using the geometric analysis of labeled alanines method.

Authors:  Anna E Daily; Denise V Greathouse; Patrick C A van der Wel; Roger E Koeppe
Journal:  Biophys J       Date:  2007-09-07       Impact factor: 4.033

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