Literature DB >> 15653322

Game-theoretical approaches to studying the evolution of biochemical systems.

Thomas Pfeiffer1, Stefan Schuster.   

Abstract

Evolutionary optimization has been successfully used to increase our understanding of key properties of biochemical systems. Traditional optimization is, however, often insufficient for gaining deeper insights into the evolution of such systems because usually there is a mutual relationship between the properties optimized by evolution and the properties of the environment. Thus, by evolving towards optimal properties, organisms change their environment, which in turn alters the optimum. Evolutionary game theory provides an appropriate framework for analyzing evolution in such 'dynamic fitness landscapes'. We therefore argue that it is a promising approach to studying the evolution of biochemical systems. Indeed, recent studies have applied evolutionary game theory to key issues in the evolution of energy metabolism.

Mesh:

Year:  2005        PMID: 15653322     DOI: 10.1016/j.tibs.2004.11.006

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  33 in total

1.  Aging may be a conditional strategic choice and not an inevitable outcome for bacteria.

Authors:  Milind Watve; Sweta Parab; Prajakta Jogdand; Sarita Keni
Journal:  Proc Natl Acad Sci U S A       Date:  2006-09-25       Impact factor: 11.205

2.  Evolution of DNA double-strand break repair by gene conversion: coevolution between a phage and a restriction-modification system.

Authors:  Koji Yahara; Ryota Horie; Ichizo Kobayashi; Akira Sasaki
Journal:  Genetics       Date:  2007-04-03       Impact factor: 4.562

3.  Switching between cooperation and competition in the use of extracellular glucose.

Authors:  Juan Carlos Aledo; Juan A Pérez-Claros; Alicia Esteban del Valle
Journal:  J Mol Evol       Date:  2007-09-01       Impact factor: 2.395

Review 4.  Unraveling microbial interactions in food fermentations: from classical to genomics approaches.

Authors:  Sander Sieuwerts; Frank A M de Bok; Jeroen Hugenholtz; Johan E T van Hylckama Vlieg
Journal:  Appl Environ Microbiol       Date:  2008-06-20       Impact factor: 4.792

5.  Use of game-theoretical methods in biochemistry and biophysics.

Authors:  Stefan Schuster; Jan-Ulrich Kreft; Anja Schroeter; Thomas Pfeiffer
Journal:  J Biol Phys       Date:  2008-08-06       Impact factor: 1.365

6.  Niche-driven evolution of metabolic and life-history strategies in natural and domesticated populations of Saccharomyces cerevisiae.

Authors:  Aymé Spor; Thibault Nidelet; Jonattan Simon; Aurélie Bourgais; Dominique de Vienne; Delphine Sicard
Journal:  BMC Evol Biol       Date:  2009-12-22       Impact factor: 3.260

7.  Origin of biomolecular games: deception and molecular evolution.

Authors:  Steven E Massey; Bud Mishra
Journal:  J R Soc Interface       Date:  2018-09       Impact factor: 4.118

8.  KRH1 and KRH2 are functionally non-redundant in signaling for pseudohyphal differentiation in Saccharomyces cerevisiae.

Authors:  Revathi S Iyer; Paike Jayadeva Bhat
Journal:  Curr Genet       Date:  2017-02-28       Impact factor: 3.886

9.  Global microbialization of coral reefs.

Authors:  Andreas F Haas; Mohamed F M Fairoz; Linda W Kelly; Craig E Nelson; Elizabeth A Dinsdale; Robert A Edwards; Steve Giles; Mark Hatay; Nao Hisakawa; Ben Knowles; Yan Wei Lim; Heather Maughan; Olga Pantos; Ty N F Roach; Savannah E Sanchez; Cynthia B Silveira; Stuart Sandin; Jennifer E Smith; Forest Rohwer
Journal:  Nat Microbiol       Date:  2016-04-25       Impact factor: 17.745

10.  Shifts in growth strategies reflect tradeoffs in cellular economics.

Authors:  Douwe Molenaar; Rogier van Berlo; Dick de Ridder; Bas Teusink
Journal:  Mol Syst Biol       Date:  2009-11-03       Impact factor: 11.429

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