Literature DB >> 15643957

Genetic variability in natural populations of Arabidopsis thaliana in northern Europe.

Hans K Stenøien1, Charles B Fenster, Anni Tonteri, Outi Savolainen.   

Abstract

Ten populations of the model plant Arabidopsis thaliana were collected along a north-south gradient in Norway and screened for microsatellite polymorphisms in 25 loci and variability in quantitative traits. Overall, the average levels of genetic diversity were found to be relatively high in these populations, compared to previously published surveys of within population variability. Six of the populations were polymorphic at microsatellite loci, resulting in an overall proportion of polymorphic loci of 18%, and a relatively high gene diversity for a selfing species (HE = 0.06). Of the overall variability, 12% was found within populations. Two of six polymorphic populations contained heterozygous individuals. Both FST and phylogenetic analyses showed no correlation between geographical and genetic distances. Haplotypic diversity patterns suggested postglacial colonization of Scandinavia from a number of different sources. Heritable variation was observed for many of the studied quantitative traits, with all populations showing variability in at least some traits, even populations with no microsatellite variability. There was a positive association between variability in quantitative traits and microsatellites within populations. Several quantitative traits exhibited QST values significantly less than FST, suggesting that selection may be acting to retard differentiation for these traits.

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Year:  2005        PMID: 15643957     DOI: 10.1111/j.1365-294X.2004.02359.x

Source DB:  PubMed          Journal:  Mol Ecol        ISSN: 0962-1083            Impact factor:   6.185


  28 in total

Review 1.  Natural variation in Arabidopsis: from molecular genetics to ecological genomics.

Authors:  Detlef Weigel
Journal:  Plant Physiol       Date:  2011-12-06       Impact factor: 8.340

Review 2.  Natural genetic variation in Arabidopsis: tools, traits and prospects for evolutionary ecology.

Authors:  Chikako Shindo; Giorgina Bernasconi; Christian S Hardtke
Journal:  Ann Bot       Date:  2007-01-26       Impact factor: 4.357

3.  Morphological and microsatellite diversity associated with ecological factors in natural populations of Medicago laciniata Mill. (Fabaceae).

Authors:  Mounawer Badri; Adel Zitoun; Houcine Ilahi; Thierry Huguet; Mohamed Elarbi Aouani
Journal:  J Genet       Date:  2008-12       Impact factor: 1.166

4.  Population genetic structure of two Medicago species shaped by distinct life form, mating system and seed dispersal.

Authors:  Juan Yan; Hai-Jia Chu; Heng-Chang Wang; Jian-Qiang Li; Tao Sang
Journal:  Ann Bot       Date:  2009-01-26       Impact factor: 4.357

Review 5.  What has natural variation taught us about plant development, physiology, and adaptation?

Authors:  Carlos Alonso-Blanco; Mark G M Aarts; Leonie Bentsink; Joost J B Keurentjes; Matthieu Reymond; Dick Vreugdenhil; Maarten Koornneef
Journal:  Plant Cell       Date:  2009-07-02       Impact factor: 11.277

6.  Distributions of Mutational Effects and the Estimation of Directional Selection in Divergent Lineages of Arabidopsis thaliana.

Authors:  Briton Park; Matthew T Rutter; Charles B Fenster; V Vaughan Symonds; Mark C Ungerer; Jeffrey P Townsend
Journal:  Genetics       Date:  2017-05-26       Impact factor: 4.562

7.  Local-scale patterns of genetic variability, outcrossing, and spatial structure in natural stands of Arabidopsis thaliana.

Authors:  Kirsten Bomblies; Levi Yant; Roosa A Laitinen; Sang-Tae Kim; Jesse D Hollister; Norman Warthmann; Joffrey Fitz; Detlef Weigel
Journal:  PLoS Genet       Date:  2010-03-26       Impact factor: 5.917

8.  Influence of mutation rate on estimators of genetic differentiation--lessons from Arabidopsis thaliana.

Authors:  Ilkka Kronholm; Olivier Loudet; Juliette de Meaux
Journal:  BMC Genet       Date:  2010-05-01       Impact factor: 2.797

9.  Demographic and genetic patterns of variation among populations of Arabidopsis thaliana from contrasting native environments.

Authors:  Alicia Montesinos; Stephen J Tonsor; Carlos Alonso-Blanco; F Xavier Picó
Journal:  PLoS One       Date:  2009-09-29       Impact factor: 3.240

10.  Phytochrome B and histone deacetylase 6 control light-induced chromatin compaction in Arabidopsis thaliana.

Authors:  Federico Tessadori; Martijn van Zanten; Penka Pavlova; Rachel Clifton; Frédéric Pontvianne; L Basten Snoek; Frank F Millenaar; Roeland Kees Schulkes; Roel van Driel; Laurentius A C J Voesenek; Charles Spillane; Craig S Pikaard; Paul Fransz; Anton J M Peeters
Journal:  PLoS Genet       Date:  2009-09-04       Impact factor: 5.917

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