Literature DB >> 15638670

One-dimensional reaction coordinates for diffusive activated rate processes in many dimensions.

Alexander Berezhkovskii1, Attila Szabo.   

Abstract

For multidimensional activated rate processes controlled by diffusive crossing of a saddle point region, we show that a one-dimensional reaction coordinate can be constructed even when the diffusion anisotropy is arbitrary. The rate constant, found using the potential of mean force along this coordinate, is identical to that predicted by the multidimensional Kramers-Langer theory. This reaction coordinate minimizes the one-dimensional rate constant obtained using a trial reaction coordinate and is orthogonal to the stochastic separatrix, the transition state that separates reactants from products. (c) 2005 American Institute of Physics.

Year:  2005        PMID: 15638670     DOI: 10.1063/1.1818091

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  26 in total

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5.  Diffusion along the splitting/commitment probability reaction coordinate.

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Journal:  J Phys Chem B       Date:  2009-08-27       Impact factor: 2.991

8.  Minimal folding pathways for coarse-grained biopolymer fragments.

Authors:  Ali R Mohazab; Steven S Plotkin
Journal:  Biophys J       Date:  2008-09-26       Impact factor: 4.033

9.  Catching a protein in the act.

Authors:  Gerhard Hummer
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-01       Impact factor: 11.205

10.  Diffusion models of protein folding.

Authors:  Robert B Best; Gerhard Hummer
Journal:  Phys Chem Chem Phys       Date:  2011-08-15       Impact factor: 3.676

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