Literature DB >> 15638640

An extended hybrid density functional (X3LYP) with improved descriptions of nonbond interactions and thermodynamic properties of molecular systems.

Xin Xu1, Qingsong Zhang, Richard P Muller, William A Goddard.   

Abstract

We derive here the form for the exact exchange energy density for a density that decays with Gaussian-type behavior at long range. This functional is intermediate between the B88 and the PW91 exchange functionals. Using this modified functional to match the form expected for Gaussian densities, we propose the X3LYP extended functional. We find that X3LYP significantly outperforms Becke three parameter Lee-Yang-Parr (B3LYP) for describing van der Waals and hydrogen bond interactions, while performing slightly better than B3LYP for predicting heats of formation, ionization potentials, electron affinities, proton affinities, and total atomic energies as validated with the extended G2 set of atoms and molecules. Thus X3LYP greatly enlarges the field of applications for density functional theory. In particular the success of X3LYP in describing the water dimer (with R(e) and D(e) within the error bars of the most accurate determinations) makes it an excellent candidate for predicting accurate ligand-protein and ligand-DNA interactions. (c) 2005 American Institute of Physics.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 15638640     DOI: 10.1063/1.1812257

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  8 in total

1.  Performance of the SMD and SM8 models for predicting solvation free energy of neutral solutes in methanol, dimethyl sulfoxide and acetonitrile.

Authors:  Caroline C Zanith; Josefredo R Pliego
Journal:  J Comput Aided Mol Des       Date:  2014-11-15       Impact factor: 3.686

2.  When does a functional correctly describe both the structure and the energy of the transition state?

Authors:  Neil Qiang Su; Pascal Pernot; Xin Xu; Andreas Savin
Journal:  J Mol Model       Date:  2017-02-09       Impact factor: 1.810

3.  Infinite dilution activity coefficient from SMD calculations: accuracy and performance for predicting liquid-liquid equilibria.

Authors:  Fernando M Lisboa; Josefredo R Pliego
Journal:  J Mol Model       Date:  2018-02-14       Impact factor: 1.810

4.  Free energy profile and microkinetic modeling of base-catalyzed conjugate addition reaction of nitroalkanes to α,β-unsaturated ketones in polar and apolar solvents.

Authors:  Virginia C Rufino; Stella M Resende; Josefredo R Pliego
Journal:  J Mol Model       Date:  2018-06-07       Impact factor: 1.810

5.  Hydrogen bonding interactions in PN...HX complexes: DFT and ab initio studies of structure, properties and topology.

Authors:  Pradeep Risikrishna Varadwaj
Journal:  J Mol Model       Date:  2009-10-23       Impact factor: 1.810

6.  Evaluation of density functional methods on the geometric and energetic descriptions of species involved in Cu⁺-promoted catalysis.

Authors:  Carlos E P Bernardo; Nicholas P Bauman; Piotr Piecuch; Pedro J Silva
Journal:  J Mol Model       Date:  2013-11-13       Impact factor: 1.810

7.  Computational modeling of factors that modulate the unique FeNO bonding in {FeNO}(6) heme-thiolate model complexes.

Authors:  Douglas P Linder; Kenton R Rodgers
Journal:  J Biol Inorg Chem       Date:  2007-03-14       Impact factor: 3.862

8.  Conformational analysis, molecular structure and solid state simulation of the antiviral drug acyclovir (zovirax) using density functional theory methods.

Authors:  Margarita Clara Alvarez-Ros; Mauricio Alcolea Palafox
Journal:  Pharmaceuticals (Basel)       Date:  2014-06-06
  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.