Literature DB >> 15634347

Principles behind the multifarious control of signal transduction. ERK phosphorylation and kinase/phosphatase control.

Jorrit J Hornberg1, Frank J Bruggeman, Bernd Binder, Christian R Geest, A J Marjolein Bij de Vaate, Jan Lankelma, Reinhart Heinrich, Hans V Westerhoff.   

Abstract

General and simple principles are identified that govern signal transduction. The effects of kinase and phosphatase inhibition on a MAP kinase pathway are first examined in silico. Quantitative measures for the control of signal amplitude, duration and integral strength are introduced. We then identify and prove new principles, such that total control on signal amplitude and on final signal strength must amount to zero, and total control on signal duration and on integral signal intensity must equal -1. Collectively, kinases control amplitudes more than duration, whereas phosphatases tend to control both. We illustrate and validate these principles experimentally: (a) a kinase inhibitor affects the amplitude of EGF-induced ERK phosphorylation much more than its duration and (b) a phosphatase inhibitor influences both signal duration and signal amplitude, in particular long after EGF administration. Implications for the cellular decision between growth and differentiation are discussed.

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Year:  2005        PMID: 15634347     DOI: 10.1111/j.1432-1033.2004.04404.x

Source DB:  PubMed          Journal:  FEBS J        ISSN: 1742-464X            Impact factor:   5.542


  51 in total

1.  Systemic redox regulation of cellular information processing.

Authors:  Gaurav Dwivedi; Melissa L Kemp
Journal:  Antioxid Redox Signal       Date:  2012-02-15       Impact factor: 8.401

Review 2.  Computational modelling of the receptor-tyrosine-kinase-activated MAPK pathway.

Authors:  Richard J Orton; Oliver E Sturm; Vladislav Vyshemirsky; Muffy Calder; David R Gilbert; Walter Kolch
Journal:  Biochem J       Date:  2005-12-01       Impact factor: 3.857

3.  An optimal number of molecules for signal amplification and discrimination in a chemical cascade.

Authors:  Yoshihiro Morishita; Tetsuya J Kobayashi; Kazuyuki Aihara
Journal:  Biophys J       Date:  2006-06-23       Impact factor: 4.033

4.  Oncogenes are to lose control on signaling following mutation: should we aim off target?

Authors:  Jorrit J Hornberg; Hans V Westerhoff
Journal:  Mol Biotechnol       Date:  2006-10       Impact factor: 2.695

5.  Epidermal growth factor receptor-induced activator protein 1 activity controls density-dependent growth inhibition in normal rat kidney fibroblasts.

Authors:  Jorrit J Hornberg; Henk Dekker; Peter H J Peters; Petra Langerak; Hans V Westerhoff; Jan Lankelma; Everardus J J van Zoelen
Journal:  Mol Biotechnol       Date:  2006-10       Impact factor: 2.695

6.  Mathematical and computational analysis of adaptation via feedback inhibition in signal transduction pathways.

Authors:  Marcelo Behar; Nan Hao; Henrik G Dohlman; Timothy C Elston
Journal:  Biophys J       Date:  2007-05-18       Impact factor: 4.033

Review 7.  Cell-signalling dynamics in time and space.

Authors:  Boris N Kholodenko
Journal:  Nat Rev Mol Cell Biol       Date:  2006-03       Impact factor: 94.444

8.  Systems biology towards life in silico: mathematics of the control of living cells.

Authors:  Hans V Westerhoff; Alexey Kolodkin; Riaan Conradie; Stephen J Wilkinson; Frank J Bruggeman; Klaas Krab; Jan H van Schuppen; Hanna Hardin; Barbara M Bakker; Martijn J Moné; Katja N Rybakova; Marco Eijken; Hans J P van Leeuwen; Jacky L Snoep
Journal:  J Math Biol       Date:  2008-02-16       Impact factor: 2.259

9.  Tunable signal processing through a kinase control cycle: the IKK signaling node.

Authors:  Marcelo Behar; Alexander Hoffmann
Journal:  Biophys J       Date:  2013-07-02       Impact factor: 4.033

10.  From Physics to Pharmacology?

Authors:  Richard J Allen; Timothy C Elston
Journal:  Rep Prog Phys       Date:  2011-01
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