Literature DB >> 15631480

Temperature dependence of three-body hydrophobic interactions: potential of mean force, enthalpy, entropy, heat capacity, and nonadditivity.

Maria Sabaye Moghaddam1, Seishi Shimizu, Hue Sun Chan.   

Abstract

Temperature-dependent three-body hydrophobic interactions are investigated by extensive constant-pressure simulations of methane-like nonpolar solutes in TIP4P model water at six temperatures. A multiple-body hydrophobic interaction is considered to be (i) additive, (ii) cooperative, or (iii) anti-cooperative if its potential of mean force (PMF) is (i) equal to, (ii) smaller than, or (iii) larger than the corresponding pairwise sum of two-methane PMFs. We found that three-methane hydrophobic interactions at the desolvation barrier are anti-cooperative at low to intermediate T, and vary from essentially additive to slightly cooperative at high T. Interactions at the contact minimum are slightly anti-cooperative over a wider temperature range. Enthalpy, entropy, and heat capacity are estimated from the computed PMFs. Contrary to the common expectation that burial of solvent-accessible nonpolar surface area always leads to a decrease in heat capacity, the present results show that the change in heat capacity upon three-methane association is significantly positive at the desolvation barrier and slightly positive at the contact minimum. This suggests that the heat capacity signature of a hydrophobic polymer need not vary uniformly nor monotonically with conformational compactness. Ramifications for protein folding are discussed.

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Year:  2005        PMID: 15631480     DOI: 10.1021/ja040165y

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  7 in total

1.  Chevron behavior and isostable enthalpic barriers in protein folding: successes and limitations of simple Gō-like modeling.

Authors:  Hüseyin Kaya; Zhirong Liu; Hue Sun Chan
Journal:  Biophys J       Date:  2005-04-29       Impact factor: 4.033

2.  Hydrophobic association of alpha-helices, steric dewetting, and enthalpic barriers to protein folding.

Authors:  Justin L MacCallum; Maria Sabaye Moghaddam; Hue Sun Chan; D Peter Tieleman
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-02       Impact factor: 11.205

3.  Hydrophobic interactions in model enclosures from small to large length scales: non-additivity in explicit and implicit solvent models.

Authors:  Lingle Wang; Richard A Friesner; B J Berne
Journal:  Faraday Discuss       Date:  2010       Impact factor: 4.008

4.  The application of the integral equation theory to study the hydrophobic interaction.

Authors:  Tomaž Mohorič; Tomaz Urbic; Barbara Hribar-Lee
Journal:  J Chem Phys       Date:  2014-01-14       Impact factor: 3.488

5.  Comparative roles of charge, π, and hydrophobic interactions in sequence-dependent phase separation of intrinsically disordered proteins.

Authors:  Suman Das; Yi-Hsuan Lin; Robert M Vernon; Julie D Forman-Kay; Hue Sun Chan
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-02       Impact factor: 11.205

6.  Theory for protein folding cooperativity: helix bundles.

Authors:  Kingshuk Ghosh; K A Dill
Journal:  J Am Chem Soc       Date:  2009-02-18       Impact factor: 15.419

7.  Native contact density and nonnative hydrophobic effects in the folding of bacterial immunity proteins.

Authors:  Tao Chen; Hue Sun Chan
Journal:  PLoS Comput Biol       Date:  2015-05-27       Impact factor: 4.475

  7 in total

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