Literature DB >> 15630617

An EST resource for cassava and other species of Euphorbiaceae.

James V Anderson1, Michel Delseny, Martin A Fregene, Veronique Jorge, Chikelu Mba, Camilo Lopez, Silvia Restrepo, Mauricio Soto, Benoit Piegu, Valerie Verdier, Richard Cooke, Joe Tohme, David P Horvath.   

Abstract

Cassava (Manihot esculenta) is a major food staple for nearly 600 million people in Africa, Asia, and Latin America. Major losses in yield result from biotic and abiotic stresses that include diseases such as Cassava Mosaic Disease (CMD) and Cassava Bacterial Blight (CBB), drought, and acid soils. Additional losses also occur from deterioration during the post-harvest storage of roots. To help cassava breeders overcome these obstacles, the scientific community has turned to modern genomics approaches to identify key genetic characteristics associated with resistance to these yield-limiting factors. One approach for developing a genomics program requires the development of ESTs (expressed sequence tags). To date, nearly 23,000 ESTs have been developed from various cassava tissues, and genotypes. Preliminary analysis indicates existing EST resources contain at least 6000-7000 unigenes. Data presented in this report indicate that the cassava ESTs will be a valuable resource for the study of genetic diversity, stress resistance, and growth and development, not only in cassava, but also other members of the Euphorbiaceae family.

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Year:  2004        PMID: 15630617     DOI: 10.1007/s11103-004-5046-6

Source DB:  PubMed          Journal:  Plant Mol Biol        ISSN: 0167-4412            Impact factor:   4.076


  38 in total

Review 1.  The application of DNA microarrays in gene expression analysis.

Authors:  N L van Hal; O Vorst; A M van Houwelingen; E J Kok; A Peijnenburg; A Aharoni; A J van Tunen; J Keijer
Journal:  J Biotechnol       Date:  2000-03-31       Impact factor: 3.307

Review 2.  Yesterday's polyploids and the mystery of diploidization.

Authors:  K H Wolfe
Journal:  Nat Rev Genet       Date:  2001-05       Impact factor: 53.242

3.  Quantitative monitoring of gene expression patterns with a complementary DNA microarray.

Authors:  M Schena; D Shalon; R W Davis; P O Brown
Journal:  Science       Date:  1995-10-20       Impact factor: 47.728

4.  dbEST--database for "expressed sequence tags".

Authors:  M S Boguski; T M Lowe; C M Tolstoshev
Journal:  Nat Genet       Date:  1993-08       Impact factor: 38.330

5.  The hidden duplication past of Arabidopsis thaliana.

Authors:  Cedric Simillion; Klaas Vandepoele; Marc C E Van Montagu; Marc Zabeau; Yves Van de Peer
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-08       Impact factor: 11.205

6.  Differential gene expression in response to mechanical wounding and insect feeding in Arabidopsis.

Authors:  P Reymond; H Weber; M Damond; E E Farmer
Journal:  Plant Cell       Date:  2000-05       Impact factor: 11.277

7.  Genetic analysis and QTL mapping of early root bulking in an F1 population of non-inbred parents in cassava ( Manihot esculenta Crantz).

Authors:  E Okogbenin; M Fregene
Journal:  Theor Appl Genet       Date:  2002-09-07       Impact factor: 5.699

8.  Serial analysis of gene expression (SAGE) of host-plant resistance to the cassava mosaic disease (CMD).

Authors:  M Fregene; H Matsumura; A Akano; A Dixon; R Terauchi
Journal:  Plant Mol Biol       Date:  2004-11       Impact factor: 4.076

9.  A draft sequence of the rice genome (Oryza sativa L. ssp. japonica).

Authors:  Stephen A Goff; Darrell Ricke; Tien-Hung Lan; Gernot Presting; Ronglin Wang; Molly Dunn; Jane Glazebrook; Allen Sessions; Paul Oeller; Hemant Varma; David Hadley; Don Hutchison; Chris Martin; Fumiaki Katagiri; B Markus Lange; Todd Moughamer; Yu Xia; Paul Budworth; Jingping Zhong; Trini Miguel; Uta Paszkowski; Shiping Zhang; Michelle Colbert; Wei-lin Sun; Lili Chen; Bret Cooper; Sylvia Park; Todd Charles Wood; Long Mao; Peter Quail; Rod Wing; Ralph Dean; Yeisoo Yu; Andrey Zharkikh; Richard Shen; Sudhir Sahasrabudhe; Alun Thomas; Rob Cannings; Alexander Gutin; Dmitry Pruss; Julia Reid; Sean Tavtigian; Jeff Mitchell; Glenn Eldredge; Terri Scholl; Rose Mary Miller; Satish Bhatnagar; Nils Adey; Todd Rubano; Nadeem Tusneem; Rosann Robinson; Jane Feldhaus; Teresita Macalma; Arnold Oliphant; Steven Briggs
Journal:  Science       Date:  2002-04-05       Impact factor: 47.728

10.  Identification of unstable transcripts in Arabidopsis by cDNA microarray analysis: rapid decay is associated with a group of touch- and specific clock-controlled genes.

Authors:  Rodrigo A Gutierrez; Rob M Ewing; J Michael Cherry; Pamela J Green
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-07       Impact factor: 11.205

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  16 in total

1.  Identification, validation and high-throughput genotyping of transcribed gene SNPs in cassava.

Authors:  Morag E Ferguson; Sarah J Hearne; Timothy J Close; Steve Wanamaker; William A Moskal; Christopher D Town; Joe de Young; Pradeep Reddy Marri; Ismail Yusuf Rabbi; Etienne P de Villiers
Journal:  Theor Appl Genet       Date:  2011-11-09       Impact factor: 5.699

Review 2.  Cassava: constraints to production and the transfer of biotechnology to African laboratories.

Authors:  Simon E Bull; Joseph Ndunguru; Wilhelm Gruissem; John R Beeching; Hervé Vanderschuren
Journal:  Plant Cell Rep       Date:  2011-01-07       Impact factor: 4.570

3.  An ordered EST catalogue and gene expression profiles of cassava (Manihot esculenta) at key growth stages.

Authors:  You-Zhi Li; Ying-Hua Pan; Chang-Bin Sun; Hai-Tao Dong; Xing-Lu Luo; Zhi-Qiang Wang; Ji-Liang Tang; Baoshan Chen
Journal:  Plant Mol Biol       Date:  2010-10-19       Impact factor: 4.076

4.  Transcriptome profiling of low temperature-treated cassava apical shoots showed dynamic responses of tropical plant to cold stress.

Authors:  Dong An; Jun Yang; Peng Zhang
Journal:  BMC Genomics       Date:  2012-02-10       Impact factor: 3.969

5.  Transcriptome analysis using a high-density oligomicroarray under drought stress in various genotypes of cassava: an important tropical crop.

Authors:  Yoshinori Utsumi; Maho Tanaka; Taeko Morosawa; Atsushi Kurotani; Takuhiro Yoshida; Keiichi Mochida; Akihiro Matsui; Yoshimi Umemura; Manabu Ishitani; Kazuo Shinozaki; Tetsuya Sakurai; Motoaki Seki
Journal:  DNA Res       Date:  2012-05-22       Impact factor: 4.458

6.  A genome scan for quantitative trait loci affecting cyanogenic potential of cassava root in an outbred population.

Authors:  Sukhuman Whankaew; Supannee Poopear; Supanath Kanjanawattanawong; Sithichoke Tangphatsornruang; Opas Boonseng; David A Lightfoot; Kanokporn Triwitayakorn
Journal:  BMC Genomics       Date:  2011-05-25       Impact factor: 3.969

7.  Gene-based microsatellites for cassava (Manihot esculenta Crantz): prevalence, polymorphisms, and cross-taxa utility.

Authors:  Adebola Aj Raji; James V Anderson; Olufisayo A Kolade; Chike D Ugwu; Alfred Go Dixon; Ivan L Ingelbrecht
Journal:  BMC Plant Biol       Date:  2009-09-11       Impact factor: 4.215

8.  Characterization of an 18,166 EST dataset for cassava (Manihot esculenta Crantz) enriched for drought-responsive genes.

Authors:  Y Lokko; J V Anderson; S Rudd; A Raji; D Horvath; M A Mikel; R Kim; L Liu; A Hernandez; A G O Dixon; I L Ingelbrecht
Journal:  Plant Cell Rep       Date:  2007-05-31       Impact factor: 4.964

9.  Transcriptome analysis identifies novel responses and potential regulatory genes involved in seasonal dormancy transitions of leafy spurge (Euphorbia esula L.).

Authors:  David P Horvath; Wun S Chao; Jeffrey C Suttle; Jyothi Thimmapuram; James V Anderson
Journal:  BMC Genomics       Date:  2008-11-12       Impact factor: 3.969

10.  Sequencing analysis of 20,000 full-length cDNA clones from cassava reveals lineage specific expansions in gene families related to stress response.

Authors:  Tetsuya Sakurai; Germán Plata; Fausto Rodríguez-Zapata; Motoaki Seki; Andrés Salcedo; Atsushi Toyoda; Atsushi Ishiwata; Joe Tohme; Yoshiyuki Sakaki; Kazuo Shinozaki; Manabu Ishitani
Journal:  BMC Plant Biol       Date:  2007-12-20       Impact factor: 4.215

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