Literature DB >> 15630091

The crystal structure of human adenylate kinase 6: An adenylate kinase localized to the cell nucleus.

Hui Ren1, Liya Wang, Matthew Bennett, Yuhe Liang, Xiaofeng Zheng, Fei Lu, Lanfen Li, Jie Nan, Ming Luo, Staffan Eriksson, Chuanmao Zhang, Xiao-Dong Su.   

Abstract

Adenylate kinases (AKs) play important roles in nucleotide metabolism in all organisms and in cellular energetics by means of phosphotransfer networks in eukaryotes. The crystal structure of a human AK named AK6 was determined by in-house sulfur single-wavelength anomalous dispersion phasing methods and refined to 2.0-A resolution with a free R factor of 21.8%. Sequence analyses revealed that human AK6 belongs to a distinct subfamily of AKs present in all eukaryotic organisms sequenced so far. Enzymatic assays show that human AK6 has properties similar with other AKs, particularly with AK5. Fluorescence microscopy showed that human AK6 is localized predominantly to the nucleus of HeLa cells. The identification of a nuclear-localized AK sheds light on nucleotide metabolism in the nucleus and the energetic communication between mitochondria and nucleus by means of phosphotransfer networks.

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Year:  2005        PMID: 15630091      PMCID: PMC544302          DOI: 10.1073/pnas.0407459102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  29 in total

1.  Energetic communication between mitochondria and nucleus directed by catalyzed phosphotransfer.

Authors:  Petras P Dzeja; Ryan Bortolon; Carmen Perez-Terzic; Ekshon L Holmuhamedov; Andre Terzic
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-15       Impact factor: 11.205

2.  Protein preparation, crystallization and preliminary X-ray analysis of human adrenal gland protein AD-004.

Authors:  Hui Ren; Yuhe Liang; Rui Li; Haitao Ding; Shihong Qiu; Shanyun Lu; Jianli An; Lanfen Li; Ming Luo; Xiaofeng Zheng; Xiao Dong Su
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-06-22

3.  Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons.

Authors:  A Nicholls; K A Sharp; B Honig
Journal:  Proteins       Date:  1991

4.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

5.  Ancient divergence of long and short isoforms of adenylate kinase: molecular evolution of the nucleoside monophosphate kinase family.

Authors:  K Fukami-Kobayashi; M Nosaka; A Nakazawa; M Go
Journal:  FEBS Lett       Date:  1996-05-06       Impact factor: 4.124

6.  Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.

Authors:  Robert L Strausberg; Elise A Feingold; Lynette H Grouse; Jeffery G Derge; Richard D Klausner; Francis S Collins; Lukas Wagner; Carolyn M Shenmen; Gregory D Schuler; Stephen F Altschul; Barry Zeeberg; Kenneth H Buetow; Carl F Schaefer; Narayan K Bhat; Ralph F Hopkins; Heather Jordan; Troy Moore; Steve I Max; Jun Wang; Florence Hsieh; Luda Diatchenko; Kate Marusina; Andrew A Farmer; Gerald M Rubin; Ling Hong; Mark Stapleton; M Bento Soares; Maria F Bonaldo; Tom L Casavant; Todd E Scheetz; Michael J Brownstein; Ted B Usdin; Shiraki Toshiyuki; Piero Carninci; Christa Prange; Sam S Raha; Naomi A Loquellano; Garrick J Peters; Rick D Abramson; Sara J Mullahy; Stephanie A Bosak; Paul J McEwan; Kevin J McKernan; Joel A Malek; Preethi H Gunaratne; Stephen Richards; Kim C Worley; Sarah Hale; Angela M Garcia; Laura J Gay; Stephen W Hulyk; Debbie K Villalon; Donna M Muzny; Erica J Sodergren; Xiuhua Lu; Richard A Gibbs; Jessica Fahey; Erin Helton; Mark Ketteman; Anuradha Madan; Stephanie Rodrigues; Amy Sanchez; Michelle Whiting; Anup Madan; Alice C Young; Yuriy Shevchenko; Gerard G Bouffard; Robert W Blakesley; Jeffrey W Touchman; Eric D Green; Mark C Dickson; Alex C Rodriguez; Jane Grimwood; Jeremy Schmutz; Richard M Myers; Yaron S N Butterfield; Martin I Krzywinski; Ursula Skalska; Duane E Smailus; Angelique Schnerch; Jacqueline E Schein; Steven J M Jones; Marco A Marra
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-11       Impact factor: 11.205

7.  ALSCRIPT: a tool to format multiple sequence alignments.

Authors:  G J Barton
Journal:  Protein Eng       Date:  1993-01

8.  The essential protein fap7 is involved in the oxidative stress response of Saccharomyces cerevisiae.

Authors:  H Juhnke; C Charizanis; F Latifi; B Krems; K D Entian
Journal:  Mol Microbiol       Date:  2000-02       Impact factor: 3.501

9.  Movie of the structural changes during a catalytic cycle of nucleoside monophosphate kinases.

Authors:  C Vonrhein; G J Schlauderer; G E Schulz
Journal:  Structure       Date:  1995-05-15       Impact factor: 5.006

10.  Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold.

Authors:  J E Walker; M Saraste; M J Runswick; N J Gay
Journal:  EMBO J       Date:  1982       Impact factor: 11.598

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  31 in total

Review 1.  History of protein crystallography in China.

Authors:  Zihe Rao
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2007-06-29       Impact factor: 6.237

2.  Essential ribosome assembly factor Fap7 regulates a hierarchy of RNA-protein interactions during small ribosomal subunit biogenesis.

Authors:  Ute A Hellmich; Benjamin L Weis; Anatoli Lioutikov; Jan Philip Wurm; Marco Kaiser; Nina A Christ; Katharina Hantke; Peter Kötter; Karl-Dieter Entian; Enrico Schleiff; Jens Wöhnert
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-03       Impact factor: 11.205

3.  Depletion of hCINAP by RNA interference causes defects in Cajal body formation, histone transcription, and cell viability.

Authors:  Jinfang Zhang; Feiyun Zhang; Xiaofeng Zheng
Journal:  Cell Mol Life Sci       Date:  2010-02-26       Impact factor: 9.261

4.  ATP binding to hemoglobin response gene 1 protein is necessary for regulation of the mating type locus in Candida albicans.

Authors:  Alexander W Peterson; Michael L Pendrak; David D Roberts
Journal:  J Biol Chem       Date:  2011-03-03       Impact factor: 5.157

5.  Clinico-pathological correlation in adenylate kinase 5 autoimmune limbic encephalitis.

Authors:  Adeline S L Ng; Joel Kramer; Alejandro Centurion; Josep Dalmau; Eric Huang; Jennifer A Cotter; Michael D Geschwind
Journal:  J Neuroimmunol       Date:  2015-08-08       Impact factor: 3.478

6.  ATP-dependent pre-replicative complex assembly is facilitated by Adk1p in budding yeast.

Authors:  Xue Cheng; Zhen Xu; Jiafeng Wang; Yuanliang Zhai; Yongjun Lu; Chun Liang
Journal:  J Biol Chem       Date:  2010-07-20       Impact factor: 5.157

Review 7.  Adenylate kinase and AMP signaling networks: metabolic monitoring, signal communication and body energy sensing.

Authors:  Petras Dzeja; Andre Terzic
Journal:  Int J Mol Sci       Date:  2009-04-17       Impact factor: 6.208

8.  Enzymatically inactive adenylate kinase 4 interacts with mitochondrial ADP/ATP translocase.

Authors:  Rujuan Liu; Anna-Lena Ström; Jianjun Zhai; Jozsef Gal; Shilai Bao; Weimin Gong; Haining Zhu
Journal:  Int J Biochem Cell Biol       Date:  2008-12-14       Impact factor: 5.085

9.  Adenylate kinase 5 autoimmunity in treatment refractory limbic encephalitis.

Authors:  Erdem Tüzün; Jeffrey E Rossi; Steve F Karner; Alejandro F Centurion; Josep Dalmau
Journal:  J Neuroimmunol       Date:  2007-04-25       Impact factor: 3.478

10.  Adenosine Kinase of T. b. Rhodesiense identified as the putative target of 4-[5-(4-phenoxyphenyl)-2H-pyrazol-3-yl]morpholine using chemical proteomics.

Authors:  Sabine Kuettel; Marc Mosimann; Pascal Mäser; Marcel Kaiser; Reto Brun; Leonardo Scapozza; Remo Perozzo
Journal:  PLoS Negl Trop Dis       Date:  2009-08-25
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