Literature DB >> 15625191

Regulation of the Neurospora circadian clock by an RNA helicase.

Ping Cheng1, Qun He, Qiyang He, Lixin Wang, Yi Liu.   

Abstract

The eukaryotic circadian oscillators consist of autoregulatory negative-feedback loops. FRQ, WC-1, and WC-2 are three known components of the negative-feedback loop of the Neurospora circadian oscillator. FRQ represses its own transcription by interacting with the WC-1/WC-2 complex and inhibiting WC's role in transcriptional activation. Here we show that all FRQ associates with FRH, an essential DEAD box-containing RNA helicase in Neurospora. The budding yeast homolog of FRH, Dob1p/Mtr4p, is a cofactor of exosome, an important regulator of RNA metabolism in eukaryotes. Down-regulation of FRH by inducible expression of a hairpin RNA leads to low levels of FRQ but high levels of frq RNA and the abolishment of circadian rhythmicities. FRH is associated with the WC complex and this interaction is maintained in a frq null strain. Disruption of the FRQ-FRH complex by deleting a domain in FRQ eliminates the FRQ-WC interaction, suggesting that FRH mediates the interaction between FRQ and the WC complex. These data demonstrate that FRH is an essential component in the circadian negative-feedback loop and reveal an unexpected role of an RNA helicase in regulating gene transcription.

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Year:  2004        PMID: 15625191      PMCID: PMC545885          DOI: 10.1101/gad.1266805

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  38 in total

1.  Phosphorylation of the Neurospora clock protein FREQUENCY determines its degradation rate and strongly influences the period length of the circadian clock.

Authors:  Y Liu; J Loros; J C Dunlap
Journal:  Proc Natl Acad Sci U S A       Date:  2000-01-04       Impact factor: 11.205

Review 2.  Molecular bases for circadian clocks.

Authors:  J C Dunlap
Journal:  Cell       Date:  1999-01-22       Impact factor: 41.582

3.  Nuclear localization is required for function of the essential clock protein FRQ.

Authors:  C Luo; J J Loros; J C Dunlap
Journal:  EMBO J       Date:  1998-08-10       Impact factor: 11.598

4.  Thermally regulated translational control of FRQ mediates aspects of temperature responses in the neurospora circadian clock.

Authors:  Y Liu; N Y Garceau; J J Loros; J C Dunlap
Journal:  Cell       Date:  1997-05-02       Impact factor: 41.582

5.  Alternative initiation of translation and time-specific phosphorylation yield multiple forms of the essential clock protein FREQUENCY.

Authors:  N Y Garceau; Y Liu; J J Loros; J C Dunlap
Journal:  Cell       Date:  1997-05-02       Impact factor: 41.582

6.  Dissection of a circadian oscillation into discrete domains.

Authors:  M W Merrow; N Y Garceau; J C Dunlap
Journal:  Proc Natl Acad Sci U S A       Date:  1997-04-15       Impact factor: 11.205

7.  Dob1p (Mtr4p) is a putative ATP-dependent RNA helicase required for the 3' end formation of 5.8S rRNA in Saccharomyces cerevisiae.

Authors:  J de la Cruz; D Kressler; D Tollervey; P Linder
Journal:  EMBO J       Date:  1998-02-16       Impact factor: 11.598

8.  The 3' to 5' degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3' to 5' exonucleases of the exosome complex.

Authors:  J S Anderson; R P Parker
Journal:  EMBO J       Date:  1998-03-02       Impact factor: 11.598

9.  Functions of the exosome in rRNA, snoRNA and snRNA synthesis.

Authors:  C Allmang; J Kufel; G Chanfreau; P Mitchell; E Petfalski; D Tollervey
Journal:  EMBO J       Date:  1999-10-01       Impact factor: 11.598

10.  WC-2 mediates WC-1-FRQ interaction within the PAS protein-linked circadian feedback loop of Neurospora.

Authors:  D L Denault; J J Loros; J C Dunlap
Journal:  EMBO J       Date:  2001-01-15       Impact factor: 11.598

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  101 in total

Review 1.  Spotlight on post-transcriptional control in the circadian system.

Authors:  Dorothee Staiger; Tino Köster
Journal:  Cell Mol Life Sci       Date:  2010-08-30       Impact factor: 9.261

2.  Of switches and hourglasses: regulation of subcellular traffic in circadian clocks by phosphorylation.

Authors:  Ozgür Tataroğlu; Tobias Schafmeier
Journal:  EMBO Rep       Date:  2010-11-05       Impact factor: 8.807

Review 3.  Clocks not winding down: unravelling circadian networks.

Authors:  Eric E Zhang; Steve A Kay
Journal:  Nat Rev Mol Cell Biol       Date:  2010-11       Impact factor: 94.444

4.  Alternative Use of DNA Binding Domains by the Neurospora White Collar Complex Dictates Circadian Regulation and Light Responses.

Authors:  Bin Wang; Xiaoying Zhou; Jennifer J Loros; Jay C Dunlap
Journal:  Mol Cell Biol       Date:  2015-12-28       Impact factor: 4.272

Review 5.  Circadian rhythms in Neurospora crassa and other filamentous fungi.

Authors:  Yi Liu; Deborah Bell-Pedersen
Journal:  Eukaryot Cell       Date:  2006-08

6.  Phosphorylation-dependent maturation of Neurospora circadian clock protein from a nuclear repressor toward a cytoplasmic activator.

Authors:  Tobias Schafmeier; Krisztina Káldi; Axel Diernfellner; Christian Mohr; Michael Brunner
Journal:  Genes Dev       Date:  2006-01-18       Impact factor: 11.361

7.  Molecular mechanism of suppression of circadian rhythms by a critical stimulus.

Authors:  Guocun Huang; Lixin Wang; Yi Liu
Journal:  EMBO J       Date:  2006-10-26       Impact factor: 11.598

8.  QIP, a putative exonuclease, interacts with the Neurospora Argonaute protein and facilitates conversion of duplex siRNA into single strands.

Authors:  Mekhala Maiti; Heng-Chi Lee; Yi Liu
Journal:  Genes Dev       Date:  2007-02-20       Impact factor: 11.361

9.  The small G protein RAS2 is involved in the metabolic compensation of the circadian clock in the circadian model Neurospora crassa.

Authors:  Norbert Gyöngyösi; Anita Szőke; Krisztina Ella; Krisztina Káldi
Journal:  J Biol Chem       Date:  2017-07-20       Impact factor: 5.157

10.  Molecular mechanism of temperature sensing by the circadian clock of Neurospora crassa.

Authors:  Axel C R Diernfellner; Tobias Schafmeier; Martha W Merrow; Michael Brunner
Journal:  Genes Dev       Date:  2005-08-17       Impact factor: 11.361

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