Literature DB >> 15622548

Ab initio crystal structure prediction-I. Rigid molecules.

Panagiotis G Karamertzanis1, Constantinos C Pantelides.   

Abstract

A new methodology for the prediction of molecular crystal structures using only the atomic connectivity of the molecule under consideration is presented. The approach is based on the global minimization of the lattice enthalpy of the crystal. The modeling of the electrostatic interactions is accomplished through a set of distributed charges that are optimally and automatically selected and positioned based on results of quantum mechanical calculations. A four-step global optimization algorithm is used for the identification of the local minima of the lattice enthalpy surface. A parallelized implementation of the algorithm permits a much more extensive search of the solution space than has hitherto been possible, allowing the identification of crystal structures in less frequently occurring space groups and with more than one molecule in the asymmetric unit. The algorithm has been applied successfully to the prediction of the crystal structures of 3-aza-bicyclo(3.3.1)nonane-2,4-dione (P2(1)/a, Z' = 1), allopurinol (P2(1)/c, Z' = 1), 1,3,4,6,7,9-hexa-azacycl(3.3.3)azine (Pbca, Z' = 2), and triethylenediamine (P6(3)/m, Z' = 1). In all cases, the experimentally known structure is among the most stable predicted structures, but not necessarily the global minimum. (c) 2004 Wiley Periodicals, Inc.

Entities:  

Year:  2005        PMID: 15622548     DOI: 10.1002/jcc.20165

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  21 in total

1.  Tunable recognition of the steroid alpha-face by adjacent pi-electron density.

Authors:  T Friscić; R W Lancaster; L Fábián; P G Karamertzanis
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-12       Impact factor: 11.205

2.  4-Aminoquinaldine monohydrate polymorphism: Prediction and impurity aided discovery of a difficult to access stable form.

Authors:  Doris E Braun; Herbert Oberacher; Kathrin Arnhard; Maria Orlova; Ulrich J Griesser
Journal:  CrystEngComm       Date:  2015-10-15       Impact factor: 3.545

3.  Computational and Experimental Characterization of Five Crystal Forms of Thymine: Packing Polymorphism, Polytypism/Disorder and Stoichiometric 0.8-Hydrate.

Authors:  Doris E Braun; Thomas Gelbrich; Klaus Wurst; Ulrich J Griesser
Journal:  Cryst Growth Des       Date:  2016-06-01       Impact factor: 4.076

4.  Solid state forms of 4-aminoquinaldine - From void structures with and without solvent inclusion to close packing.

Authors:  Doris E Braun; Thomas Gelbrich; Volker Kahlenberg; Ulrich J Griesser
Journal:  CrystEngComm       Date:  2015-03-28       Impact factor: 3.545

5.  The complexity of hydration of phloroglucinol: a comprehensive structural and thermodynamic characterization.

Authors:  Doris E Braun; Derek A Tocher; Sarah L Price; Ulrich J Griesser
Journal:  J Phys Chem B       Date:  2012-03-23       Impact factor: 2.991

6.  Absorbing a Little Water: The Structural, Thermodynamic, and Kinetic Relationship between Pyrogallol and Its Tetarto-Hydrate.

Authors:  Doris E Braun; Rajni M Bhardwaj; Jean-Baptiste Arlin; Alastair J Florence; Volker Kahlenberg; Ulrich J Griesser; Derek A Tocher; Sarah L Price
Journal:  Cryst Growth Des       Date:  2013-07-24       Impact factor: 4.076

7.  Solid-State Forms of β-Resorcylic Acid: How Exhaustive Should a Polymorph Screen Be?

Authors:  Doris E Braun; Panagiotis G Karamertzanis; Jean-Baptiste Arlin; Alastair J Florence; Volker Kahlenberg; Derek A Tocher; Ulrich J Griesser; Sarah L Price
Journal:  Cryst Growth Des       Date:  2010-11-30       Impact factor: 4.076

8.  Understanding the Role of Water in 1,10-Phenanthroline Monohydrate.

Authors:  Doris E Braun; Anna Schneeberger; Ulrich J Griesser
Journal:  CrystEngComm       Date:  2017-11-07       Impact factor: 3.545

9.  Experimental and Computational Hydrate Screening: Cytosine, 5-Flucytosine and Their Solid Solution.

Authors:  Doris E Braun; Volker Kahlenberg; Ulrich J Griesser
Journal:  Cryst Growth Des       Date:  2017-06-13       Impact factor: 4.076

10.  Why do Hydrates (Solvates) Form in Small Neutral Organic Molecules? Exploring the Crystal Form Landscapes of the Alkaloids Brucine and Strychnine.

Authors:  Doris E Braun; Ulrich J Griesser
Journal:  Cryst Growth Des       Date:  2016-11-02       Impact factor: 4.076

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.