Literature DB >> 28663717

Computational and Experimental Characterization of Five Crystal Forms of Thymine: Packing Polymorphism, Polytypism/Disorder and Stoichiometric 0.8-Hydrate.

Doris E Braun1, Thomas Gelbrich1, Klaus Wurst2, Ulrich J Griesser1.   

Abstract

New polymorphs of thymine emerged in an experimental search for solid forms, which was guided by the computationally generated crystal energy landscape. Three of the four anhydrates (AH) are homeoenergetic (A° - C) and their packing modes differ only in the location of oxygen and hydrogen atoms. AHs A° and B are ordered phases, whereas AH C shows disorder (X-ray diffuse scattering). Anhydrates AHs A° and B are ordered phases, whereas AH C shows disorder (X-ray diffuse scattering). Analysis of the crystal energy landscape for alternative AH C hydrogen bonded ribbon motifs identified a number of different packing modes, whose 3D structures were calculated to deviate by less than 0.24 kJ mol-1 in lattice energy. These structures provide models for stacking faults. The three anhydrates A° - C show strong similarity in their powder X-ray diffraction, thermoanalytical and spectroscopic (IR and Raman) characteristics. The already known anhydrate AH A° was identified as the thermodynamically most stable form at ambient conditions; AH B and AH C are metastable but show high kinetic stability. The hydrate of thymine is stable only at water activities (aw) > 0.95 at temperatures ≤ 25 °C. It was found to be a stoichiometric hydrate despite being a channel hydrate with an unusual water:thymine ratio of 0.8:1. Depending on the dehydration conditions, either AH C or AH D is obtained. The hydrate is the only known precursor to AH D. This study highlights the value and complementarity of simultaneous explorations of computationally and experimentally generated solid form landscapes of a small molecule anhydrate ↔ hydrate system.

Entities:  

Keywords:  Crystal structure prediction; X-ray diffraction; dehydration; gravimetric moisture sorption/desorption; isothermal calorimetry; thermal analysis; vibrational spectroscopy; water activity

Year:  2016        PMID: 28663717      PMCID: PMC5486440          DOI: 10.1021/acs.cgd.6b00459

Source DB:  PubMed          Journal:  Cryst Growth Des        ISSN: 1528-7483            Impact factor:   4.076


  50 in total

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Authors: 
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Authors: 
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9.  Water dynamics in channel hydrates investigated using H/D exchange.

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  8 in total

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2.  Imaging of dehydration in particulate matter using Raman line-focus microscopy.

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3.  Surface Induced Phenytoin Polymorph. 1. Full Structure Solution by Combining Grazing Incidence X-ray Diffraction and Crystal Structure Prediction.

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4.  Experimental and Computational Hydrate Screening: Cytosine, 5-Flucytosine and Their Solid Solution.

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Journal:  Cryst Growth Des       Date:  2017-06-13       Impact factor: 4.076

5.  Why do Hydrates (Solvates) Form in Small Neutral Organic Molecules? Exploring the Crystal Form Landscapes of the Alkaloids Brucine and Strychnine.

Authors:  Doris E Braun; Ulrich J Griesser
Journal:  Cryst Growth Des       Date:  2016-11-02       Impact factor: 4.076

6.  Factors Controlling Persistent Needle Crystal Growth: The Importance of Dominant One-Dimensional Secondary Bonding, Stacked Structures, and van der Waals Contact.

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Journal:  Cryst Growth Des       Date:  2021-05-21       Impact factor: 4.076

7.  Unraveling Complexity in the Solid Form Screening of a Pharmaceutical Salt: Why so Many Forms? Why so Few?

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Journal:  Cryst Growth Des       Date:  2017-09-07       Impact factor: 4.076

Review 8.  Control and prediction of the organic solid state: a challenge to theory and experiment.

Authors:  Sarah L Price
Journal:  Proc Math Phys Eng Sci       Date:  2018-09-19       Impact factor: 2.704

  8 in total

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