Literature DB >> 15620506

Nanoscale mechanical and dynamical properties of DNA single molecules.

Claudio Anselmi1, Pasquale DeSantis, Anita Scipioni.   

Abstract

Experimental evidence suggests DNA mechanical properties, in particular intrinsic curvature and flexibility, have a role in many relevant biological processes. Systematic investigations about the origin of DNA curvature and flexibility have been carried out; however, most of the applied experimental techniques need simplifying models to interpret the data, which can affect the results. Progress in the direct visualization of macromolecules allows the analysis of morphological properties and structural changes of DNAs directly from the digitised micrographs of single molecules. In addition, the statistical analysis of a large number of molecules gives information both on the local intrinsic curvature and the flexibility of DNA tracts at nanometric scale in relatively long sequences. However, it is necessary to extend the classical worm-like chain model (WLC) for describing conformations of intrinsically straight homogeneous polymers to DNA. This review describes the various methodologies proposed by different authors.

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Year:  2005        PMID: 15620506     DOI: 10.1016/j.bpc.2004.09.007

Source DB:  PubMed          Journal:  Biophys Chem        ISSN: 0301-4622            Impact factor:   2.352


  4 in total

1.  Modeling DNA-bending in the nucleosome: role of AA periodicity.

Authors:  Tatiana R Prytkova; Xiao Zhu; Jonathan Widom; George C Schatz
Journal:  J Phys Chem B       Date:  2011-06-16       Impact factor: 2.991

2.  Revisiting polymer statistical physics to account for the presence of long-range-correlated structural disorder in 2D DNA chains.

Authors:  J Moukhtar; C Vaillant; B Audit; A Arneodo
Journal:  Eur Phys J E Soft Matter       Date:  2011-11-16       Impact factor: 1.890

3.  Nodal cilia dynamics and the specification of the left/right axis in early vertebrate embryo development.

Authors:  Javier Buceta; Marta Ibañes; Diego Rasskin-Gutman; Yasushi Okada; Nobutaka Hirokawa; Juan Carlos Izpisúa-Belmonte
Journal:  Biophys J       Date:  2005-07-22       Impact factor: 4.033

4.  Real-time single-molecule observation of rolling-circle DNA replication.

Authors:  Nathan A Tanner; Joseph J Loparo; Samir M Hamdan; Slobodan Jergic; Nicholas E Dixon; Antoine M van Oijen
Journal:  Nucleic Acids Res       Date:  2009-01-20       Impact factor: 16.971

  4 in total

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