Literature DB >> 15614626

Multi-scale modelling and the IUPS physiome project.

Edmund J Crampin1, Nicolas P Smith, Peter J Hunter.   

Abstract

We review the development of models of cellular and tissue function and in particular address issues of multi-scale modelling, including the transition from stochastic models to continuum models and the incorporation of cell and tissue structure. The heart is used as an example of linking models at the molecular level to cell, tissue and organ level function.

Mesh:

Year:  2004        PMID: 15614626     DOI: 10.1007/s10735-004-2676-6

Source DB:  PubMed          Journal:  J Mol Histol        ISSN: 1567-2379            Impact factor:   2.611


  39 in total

Review 1.  Computational systems biology.

Authors:  Hiroaki Kitano
Journal:  Nature       Date:  2002-11-14       Impact factor: 49.962

Review 2.  Modeling total heart function.

Authors:  Peter J Hunter; Andrew J Pullan; Bruce H Smaill
Journal:  Annu Rev Biomed Eng       Date:  2003       Impact factor: 9.590

3.  Cell biology: join the crowd.

Authors:  R John Ellis; Allen P Minton
Journal:  Nature       Date:  2003-09-04       Impact factor: 49.962

4.  Monte carlo simulations of enzyme reactions in two dimensions: fractal kinetics and spatial segregation.

Authors:  Hugues Berry
Journal:  Biophys J       Date:  2002-10       Impact factor: 4.033

5.  Predicting temporal fluctuations in an intracellular signalling pathway.

Authors:  C J Morton-Firth; D Bray
Journal:  J Theor Biol       Date:  1998-05-07       Impact factor: 2.691

6.  Improved guinea-pig ventricular cell model incorporating a diadic space, IKr and IKs, and length- and tension-dependent processes.

Authors:  D Noble; A Varghese; P Kohl; P Noble
Journal:  Can J Cardiol       Date:  1998-01       Impact factor: 5.223

7.  Theoretical considerations on myofibril stiffness.

Authors:  M Forcinito; M Epstein; W Herzog
Journal:  Biophys J       Date:  1997-03       Impact factor: 4.033

Review 8.  A model of cardiac electrical activity incorporating ionic pumps and concentration changes.

Authors:  D DiFrancesco; D Noble
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1985-01-10       Impact factor: 6.237

9.  Enzyme reactions in polymer media.

Authors:  T C Laurent
Journal:  Eur J Biochem       Date:  1971-08-25

10.  Elementary steps of contraction probed by sinusoidal analysis technique in rabbit psoas fibers.

Authors:  M Kawai; Y Zhao; H R Halvorson
Journal:  Adv Exp Med Biol       Date:  1993       Impact factor: 2.622

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  7 in total

Review 1.  Toward a systems biology framework for understanding aging and health span.

Authors:  Geoffrey B West; Aviv Bergman
Journal:  J Gerontol A Biol Sci Med Sci       Date:  2009-02-17       Impact factor: 6.053

Review 2.  Applications of computational models to better understand microvascular remodelling: a focus on biomechanical integration across scales.

Authors:  Walter L Murfee; Richard S Sweat; Ken-Ichi Tsubota; Feilim Mac Gabhann; Damir Khismatullin; Shayn M Peirce
Journal:  Interface Focus       Date:  2015-04-06       Impact factor: 3.906

3.  Computational modeling for bedside application.

Authors:  Roy C P Kerckhoffs; Sanjiv M Narayan; Jeffrey H Omens; Lawrence J Mulligan; Andrew D McCulloch
Journal:  Heart Fail Clin       Date:  2008-07       Impact factor: 3.179

4.  Hierarchical semantic composition of biosimulation models using bond graphs.

Authors:  Niloofar Shahidi; Michael Pan; Soroush Safaei; Kenneth Tran; Edmund J Crampin; David P Nickerson
Journal:  PLoS Comput Biol       Date:  2021-05-13       Impact factor: 4.475

5.  Biophysically based modeling of the interstitial cells of cajal: current status and future perspectives.

Authors:  Rachel Lees-Green; Peng Du; Gregory O'Grady; Arthur Beyder; Gianrico Farrugia; Andrew J Pullan
Journal:  Front Physiol       Date:  2011-07-04       Impact factor: 4.566

Review 6.  Constraint Based Modeling Going Multicellular.

Authors:  Patricia do Rosario Martins Conde; Thomas Sauter; Thomas Pfau
Journal:  Front Mol Biosci       Date:  2016-02-10

7.  In Silico Modeling in Infectious Disease.

Authors:  Silvia Daun; Gilles Clermont
Journal:  Drug Discov Today Dis Models       Date:  2007-10-01
  7 in total

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