Literature DB >> 15611297

A nomenclature for all signal recognition particle RNAs.

Christian Zwieb1, Rob W van Nues, Magnus Alm Rosenblad, Jeremy D Brown, Tore Samuelsson.   

Abstract

The signal recognition particle (SRP) is a cytosolic ribonucleoprotein complex that guides secretory proteins to biological membranes in all organisms. The SRP RNA is at the center of the structure and function of the SRP. The comparison of the growing number of SRP RNA sequences provides a rich source for gaining valuable insight into the composition, assembly, and phylogeny of the SRP. In order to assist in the continuation of these studies, we propose an SRP RNA nomenclature applicable to the three divisions of life.

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Year:  2005        PMID： 15611297      PMCID： PMC1370686          DOI： 10.1261/rna.7203605

Source DB:  PubMed          Journal:  RNA        ISSN： 1355-8382            Impact factor:   4.942


  41 in total

1.  RNA editing associated with the generation of two distinct conformations of the trypanosomatid Leptomonas collosoma 7SL RNA.

Authors:  H Ben-Shlomo; A Levitan; N E Shay; I Goncharov; S Michaeli
Journal:  J Biol Chem       Date:  1999-09-03       Impact factor: 5.157

2.  Getting on target: the archaeal signal recognition particle.

Authors:  Christian Zwieb; Jerry Eichler
Journal:  Archaea       Date:  2002-03       Impact factor: 3.273

3.  SRP-RNA sequence alignment and secondary structure.

Authors:  N Larsen; C Zwieb
Journal:  Nucleic Acids Res       Date:  1991-01-25       Impact factor: 16.971

Review 4.  Structure and function of signal recognition particle RNA.

Authors:  C Zwieb
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  1989

5.  Functional substitution of the signal recognition particle 54-kDa subunit by its Escherichia coli homolog.

Authors:  H D Bernstein; D Zopf; D M Freymann; P Walter
Journal:  Proc Natl Acad Sci U S A       Date:  1993-06-01       Impact factor: 11.205

6.  RNA sequence analysis using covariance models.

Authors:  S R Eddy; R Durbin
Journal:  Nucleic Acids Res       Date:  1994-06-11       Impact factor: 16.971

7.  Identification of a tRNA-like molecule that copurifies with the 7SL RNA of Trypanosoma brucei.

Authors:  O Béjà; E Ullu; S Michaeli
Journal:  Mol Biochem Parasitol       Date:  1993-02       Impact factor: 1.759

8.  Each of the activities of signal recognition particle (SRP) is contained within a distinct domain: analysis of biochemical mutants of SRP.

Authors:  V Siegel; P Walter
Journal:  Cell       Date:  1988-01-15       Impact factor: 41.582

9.  GTPase domain of the 54-kD subunit of the mammalian signal recognition particle is required for protein translocation but not for signal sequence binding.

Authors:  D Zopf; H D Bernstein; P Walter
Journal:  J Cell Biol       Date:  1993-03       Impact factor: 10.539

10.  The methionine-rich domain of the 54 kDa subunit of signal recognition particle is sufficient for the interaction with signal sequences.

Authors:  H Lütcke; S High; K Römisch; A J Ashford; B Dobberstein
Journal:  EMBO J       Date:  1992-04       Impact factor: 11.598
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  32 in total

1.  Evolutionary patterns of non-coding RNAs.

Authors:  Athanasius F Bompfünewerer; Christoph Flamm; Claudia Fried; Guido Fritzsch; Ivo L Hofacker; Jörg Lehmann; Kristin Missal; Axel Mosig; Bettina Müller; Sonja J Prohaska; Bärbel M R Stadler; Peter F Stadler; Andrea Tanzer; Stefan Washietl; Christina Witwer
Journal:  Theory Biosci       Date:  2005-04       Impact factor: 1.919

2.  Compositional properties and thermal adaptation of SRP-RNA in bacteria and archaea.

Authors:  Francisco Miralles
Journal:  J Mol Evol       Date:  2010-01-13       Impact factor: 2.395

3.  Improved RNA secondary structure prediction by maximizing expected pair accuracy.

Authors:  Zhi John Lu; Jason W Gloor; David H Mathews
Journal:  RNA       Date:  2009-08-24       Impact factor: 4.942

4.  Characterization of the SRP68/72 interface of human signal recognition particle by systematic site-directed mutagenesis.

Authors:  Elena Iakhiaeva; Cynthia S Hinck; Andrew P Hinck; Christian Zwieb
Journal:  Protein Sci       Date:  2009-10       Impact factor: 6.725

5.  Compositional and structural features related to thermal stability in the archaea SRP19 and SRP54 signal recognition particle proteins.

Authors:  Francisco Miralles
Journal:  J Mol Evol       Date:  2011-04-20       Impact factor: 2.395

6.  Identification of host RNAs that interact with EBV noncoding RNA EBER2.

Authors:  Adalena V Nanni; Nara Lee
Journal:  RNA Biol       Date:  2018-09-18       Impact factor: 4.652

7.  Genome-wide mapping of RNA structure using nuclease digestion and high-throughput sequencing.

Authors:  Yue Wan; Kun Qu; Zhengqing Ouyang; Howard Y Chang
Journal:  Nat Protoc       Date:  2013-04-04       Impact factor: 13.491

8.  Down-regulation of 7SL RNA expression and impairment of vesicular protein transport pathways by Leishmania infection of macrophages.

Authors:  Smita Misra; Manish K Tripathi; Gautam Chaudhuri
Journal:  J Biol Chem       Date:  2005-06-14       Impact factor: 5.157

Review 9.  Archaea signal recognition particle shows the way.

Authors:  Christian Zwieb; Shakhawat Bhuiyan
Journal:  Archaea       Date:  2010-06-28       Impact factor: 3.273

10.  The 5e motif of eukaryotic signal recognition particle RNA contains a conserved adenosine for the binding of SRP72.

Authors:  Elena Iakhiaeva; Jacek Wower; Iwona K Wower; Christian Zwieb
Journal:  RNA       Date:  2008-04-25       Impact factor: 4.942
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