Literature DB >> 15604454

Using DSP, a reversible cross-linker, to fix tissue sections for immunostaining, microdissection and expression profiling.

Charlie C Xiang1, Eva Mezey, Mei Chen, Sharon Key, Li Ma, Michael J Brownstein.   

Abstract

Mammalian organs are typically comprised of several cell populations. Some (e.g. brain) are very heterogeneous, and this cellular complexity makes it difficult, if not impossible, to interpret expression profiles obtained with microarrays. Instruments, such as those manufactured by Leica or Arcturus, that permit laser capture microdissection of specific cells or cell groups from tissues were developed to solve this problem. To take full advantage of these instruments, however, one must be able to recognize cell populations of interest and, after they are harvested, to extract intact, unmodified RNA from them. Here we describe a novel, fast and simple method to fix and immunostain tissue sections that permits this to be done.

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Year:  2004        PMID: 15604454      PMCID: PMC545482          DOI: 10.1093/nar/gnh185

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  20 in total

1.  An evaluation of tyramide signal amplification and archived fixed and frozen tissue in microarray gene expression analysis.

Authors:  Stanislav L Karsten; Vivianna M D Van Deerlin; Chiara Sabatti; Lisa H Gill; Daniel H Geschwind
Journal:  Nucleic Acids Res       Date:  2002-01-15       Impact factor: 16.971

2.  Evaluation of non-formalin tissue fixation for molecular profiling studies.

Authors:  John W Gillespie; Carolyn J M Best; Verena E Bichsel; Kristina A Cole; Susan F Greenhut; Stephen M Hewitt; Mamoun Ahram; Yvonne B Gathright; Maria J Merino; Robert L Strausberg; Jonathan I Epstein; Stanley R Hamilton; Gallya Gannot; Galina V Baibakova; Valerie S Calvert; Michael J Flaig; Rodrigo F Chuaqui; Judi C Herring; John Pfeifer; Emmanuel F Petricoin; W Marston Linehan; Paul H Duray; G Steven Bova; Michael R Emmert-Buck
Journal:  Am J Pathol       Date:  2002-02       Impact factor: 4.307

3.  Gene transcript quantitation by real-time RT-PCR in cells selected by immunohistochemistry-laser capture microdissection.

Authors:  Neal Lindeman; David Waltregny; Sabina Signoretti; Massimo Loda
Journal:  Diagn Mol Pathol       Date:  2002-12

4.  Optimized tissue processing and staining for laser capture microdissection and nucleic acid retrieval.

Authors:  Lora E Huang; Veronica Luzzi; Torsten Ehrig; Victoria Holtschlag; Mark A Watson
Journal:  Methods Enzymol       Date:  2002       Impact factor: 1.600

5.  High-quality RNA from cells isolated by laser capture microdissection.

Authors:  A Mikulowska-Mennis; T B Taylor; P Vishnu; S A Michie; R Raja; N Horner; S T Kunitake
Journal:  Biotechniques       Date:  2002-07       Impact factor: 1.993

6.  Ratio statistics of gene expression levels and applications to microarray data analysis.

Authors:  Yidong Chen; Vishnu Kamat; Edward R Dougherty; Michael L Bittner; Paul S Meltzer; Jeffery M Trent
Journal:  Bioinformatics       Date:  2002-09       Impact factor: 6.937

7.  Quantitative gene expression analysis in microdissected archival formalin-fixed and paraffin-embedded tumor tissue.

Authors:  K Specht; T Richter; U Müller; A Walch; M Werner; H Höfler
Journal:  Am J Pathol       Date:  2001-02       Impact factor: 4.307

8.  Quantitative analysis of oxytocin and vasopressin messenger ribonucleic acids in single magnocellular neurons isolated from supraoptic nucleus of rat hypothalamus.

Authors:  D Xi; K Kusano; H Gainer
Journal:  Endocrinology       Date:  1999-10       Impact factor: 4.736

9.  Amine-modified random primers to label probes for DNA microarrays.

Authors:  Charlie C Xiang; Olga A Kozhich; Mei Chen; Jason M Inman; Quang N Phan; Yidong Chen; Michael J Brownstein
Journal:  Nat Biotechnol       Date:  2002-07       Impact factor: 54.908

10.  Identification of cell-specific messenger ribonucleic acids in oxytocinergic and vasopressinergic magnocellular neurons in rat supraoptic nucleus by single-cell differential hybridization.

Authors:  Mitsuo Yamashita; Eric Glasgow; Bing-Jun Zhang; Kiyoshi Kusano; Harold Gainer
Journal:  Endocrinology       Date:  2002-11       Impact factor: 4.736

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  18 in total

1.  Phosphatidylinositol-4-kinase type II alpha contains an AP-3-sorting motif and a kinase domain that are both required for endosome traffic.

Authors:  Branch Craige; Gloria Salazar; Victor Faundez
Journal:  Mol Biol Cell       Date:  2008-02-06       Impact factor: 4.138

2.  Simultaneous isolation of DNA and RNA from the same cell population obtained by laser capture microdissection for genome and transcriptome profiling.

Authors:  Chang Xu; John R Houck; Wenhong Fan; Pei Wang; Yu Chen; Melissa Upton; Neal D Futran; Stephen M Schwartz; Lue P Zhao; Chu Chen; Eduardo Mendez
Journal:  J Mol Diagn       Date:  2008-02-07       Impact factor: 5.568

3.  New Determinant for the CaVbeta2 subunit modulation of the CaV1.2 calcium channel.

Authors:  Qi Zong Lao; Evgeny Kobrinsky; Jo Beth Harry; Arippa Ravindran; Nikolai M Soldatov
Journal:  J Biol Chem       Date:  2008-04-14       Impact factor: 5.157

Review 4.  Beyond laser microdissection technology: follow the yellow brick road for cancer research.

Authors:  Luc G Legres; Anne Janin; Christophe Masselon; Philippe Bertheau
Journal:  Am J Cancer Res       Date:  2014-01-15       Impact factor: 6.166

5.  Laser capture microdissection for protein and NanoString RNA analysis.

Authors:  Yelena Golubeva; Rosalba Salcedo; Claudius Mueller; Lance A Liotta; Virginia Espina
Journal:  Methods Mol Biol       Date:  2013

6.  The human cytomegalovirus gene products essential for late viral gene expression assemble into prereplication complexes before viral DNA replication.

Authors:  Hiroki Isomura; Mark F Stinski; Takayuki Murata; Yoriko Yamashita; Teru Kanda; Shinya Toyokuni; Tatsuya Tsurumi
Journal:  J Virol       Date:  2011-04-20       Impact factor: 5.103

7.  Development of an optimized protocol for studying the interaction of filamentous bacteriophage with mammalian cells by fluorescence microscopy.

Authors:  Gopal Abbineni; Barbara Safiejko-Mroczka; Chuanbin Mao
Journal:  Microsc Res Tech       Date:  2010-05       Impact factor: 2.769

8.  Preserving Single Cells in Space and Time for Analytical Assays.

Authors:  Luke A Gallion; Matthew M Anttila; David H Abraham; Angela Proctor; Nancy L Allbritton
Journal:  Trends Analyt Chem       Date:  2019-11-07       Impact factor: 12.296

9.  Hermansky-Pudlak syndrome protein complexes associate with phosphatidylinositol 4-kinase type II alpha in neuronal and non-neuronal cells.

Authors:  Gloria Salazar; Stephanie Zlatic; Branch Craige; Andrew A Peden; Jan Pohl; Victor Faundez
Journal:  J Biol Chem       Date:  2008-11-14       Impact factor: 5.157

10.  A comprehensive strategy to identify stoichiometric membrane protein interactomes.

Authors:  Avanti Gokhale; Patricia Perez-Cornejo; Charity Duran; H Criss Hartzell; Victor Faundez
Journal:  Cell Logist       Date:  2012-10-01
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