Literature DB >> 15602593

Bioorthogonal organic chemistry in living cells: novel strategies for labeling biomolecules.

Paul F van Swieten1, Michiel A Leeuwenburgh, Benedikt M Kessler, Herman S Overkleeft.   

Abstract

The chemical labeling of biomolecules continues to be an important tool for the study of their function and cellular fate. Attention is increasingly focused on labeling of biomolecules in living cells, since cell lysis introduces many artefacts. In addition, with the advances in biocompatible synthetic organic chemistry, a whole new field of opportunity has opened up, affording high diversity in the nature of the label as well as a choice of ligation reactions. In recent years, several different two-step labeling strategies have emerged. These rely on the introduction of a bioorthogonal attachment site into a biomolecule, then ligation of a reporter molecule to this site using bioorthogonal organic chemistry. This Perspective focuses on these techniques, their implications and future directions.

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Year:  2004        PMID: 15602593     DOI: 10.1039/b412558d

Source DB:  PubMed          Journal:  Org Biomol Chem        ISSN: 1477-0520            Impact factor:   3.876


  16 in total

Review 1.  Bioorthogonal chemistry: recent progress and future directions.

Authors:  Reyna K V Lim; Qing Lin
Journal:  Chem Commun (Camb)       Date:  2010-01-21       Impact factor: 6.222

2.  Click Chemistry Reagent for Identification of Sites of Covalent Ligand Incorporation in Integral Membrane Proteins.

Authors:  Melissa M Budelier; Wayland W L Cheng; Lucie Bergdoll; Zi-Wei Chen; Jeff Abramson; Kathiresan Krishnan; Mingxing Qian; Douglas F Covey; James W Janetka; Alex S Evers
Journal:  Anal Chem       Date:  2017-02-09       Impact factor: 6.986

3.  Recent advances in chemical proteomics: exploring the post-translational proteome.

Authors:  Edward W Tate
Journal:  J Chem Biol       Date:  2008-05-09

4.  Evaluation of sulfatase-directed quinone methide traps for proteomics.

Authors:  Janina Lenger; Marius Schröder; Eva C Ennemann; Benjamin Müller; Chi-Huey Wong; Thomas Noll; Thomas Dierks; Sarah R Hanson; Norbert Sewald
Journal:  Bioorg Med Chem       Date:  2011-04-24       Impact factor: 3.641

5.  Synthesis and spectroscopic characterization of fluorescent boron dipyrromethene-derived hydrazones.

Authors:  Ozlem Dilek; Susan L Bane
Journal:  J Fluoresc       Date:  2010-10-01       Impact factor: 2.217

6.  Allylic selenosulfide rearrangement: a method for chemical ligation to cysteine and other thiols.

Authors:  David Crich; Venkataramanan Krishnamurthy; Thomas K Hutton
Journal:  J Am Chem Soc       Date:  2006-03-01       Impact factor: 15.419

7.  Dechalcogenative allylic selenosulfide and disulfide rearrangements: complementary methods for the formation of allylic sulfides in the absence of electrophiles. Scope, limitations, and application to the functionalization of unprotected peptides in aqueous media.

Authors:  David Crich; Venkataramanan Krishnamurthy; Franck Brebion; Maheswaran Karatholuvhu; Venkataraman Subramanian; Thomas K Hutton
Journal:  J Am Chem Soc       Date:  2007-07-27       Impact factor: 15.419

8.  Azido-BODIPY acid reveals quantitative Staudinger-Bertozzi ligation in two-step activity-based proteasome profiling.

Authors:  Martijn Verdoes; Bogdan I Florea; Ulrik Hillaert; Lianne I Willems; Wouter A van der Linden; Myra Sae-Heng; Dmitri V Filippov; Alexei F Kisselev; Gijsbert A van der Marel; Herman S Overkleeft
Journal:  Chembiochem       Date:  2008-07-21       Impact factor: 3.164

9.  Farnesyl diphosphate analogues with omega-bioorthogonal azide and alkyne functional groups for protein farnesyl transferase-catalyzed ligation reactions.

Authors:  Guillermo R Labadie; Rajesh Viswanathan; C Dale Poulter
Journal:  J Org Chem       Date:  2007-11-03       Impact factor: 4.354

Review 10.  Bioorthogonal chemistry: strategies and recent developments.

Authors:  Carlo P Ramil; Qing Lin
Journal:  Chem Commun (Camb)       Date:  2013-12-07       Impact factor: 6.222

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