Literature DB >> 15585663

Different patterns in the recognition of editing sites in plant mitochondria.

David Choury1, Jean-Claude Farré, Xavier Jordana, Alejandro Araya.   

Abstract

Higher plant mitochondrial mRNAs are extensively modified by highly specific C-to-U conversions. However, the determinants of recognition specificity are, to date, unknown. Here, we analyse the cis-elements involved in the recognition of two editing sites in a cox2 gene in wheat mitochondria. A minimal region of 23 nt was found to be involved in recognition of the editing site C77, similar to our previous report for site C259. These regions were correctly recognized by the mitochondrial editing machinery when placed elsewhere in the transcript. The nearest neighbour residues of the target C play a crucial role in editing, but the nature and position of the residue varies according to the editing site concerned. The target region seems to be formed by two regions 5' and 3', which can be separated by a maximum of two residues. Studies on single residue mutants concerning every position in the 23 nt region indicated that editing sites are affected differently by their neighbouring sequences. These results suggest that, notwithstanding the similar extent and location of cis-elements, the editing site recognition mechanisms may differ in plant mitochondria.

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Year:  2004        PMID: 15585663      PMCID: PMC535677          DOI: 10.1093/nar/gkh969

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  26 in total

Review 1.  RNA editing.

Authors:  A Brennicke; A Marchfelder; S Binder
Journal:  FEMS Microbiol Rev       Date:  1999-06       Impact factor: 16.408

2.  Gene expression in isolated plant mitochondria: high fidelity of transcription, splicing and editing of a transgene product in electroporated organelles.

Authors:  J C Farré; A Araya
Journal:  Nucleic Acids Res       Date:  2001-06-15       Impact factor: 16.971

Review 3.  Editing machines: the complexities of trypanosome RNA editing.

Authors:  Susan Madison-Antenucci; Jayleen Grams; Stephen L Hajduk
Journal:  Cell       Date:  2002-02-22       Impact factor: 41.582

4.  A site-specific factor interacts directly with its cognate RNA editing site in chloroplast transcripts.

Authors:  Tetsuya Miyamoto; Junichi Obokata; Masahiro Sugiura
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-23       Impact factor: 11.205

5.  Cross-competition in transgenic chloroplasts expressing single editing sites reveals shared cis elements.

Authors:  Anne-Laure Chateigner-Boutin; Maureen R Hanson
Journal:  Mol Cell Biol       Date:  2002-12       Impact factor: 4.272

6.  Recognition of RNA editing sites is directed by unique proteins in chloroplasts: biochemical identification of cis-acting elements and trans-acting factors involved in RNA editing in tobacco and pea chloroplasts.

Authors:  Tetsuya Miyamoto; Junichi Obokata; Masahiro Sugiura
Journal:  Mol Cell Biol       Date:  2002-10       Impact factor: 4.272

7.  Complex cis-elements determine an RNA editing site in pea mitochondria.

Authors:  Mizuki Takenaka; Julia Neuwirt; Axel Brennicke
Journal:  Nucleic Acids Res       Date:  2004-08-04       Impact factor: 16.971

8.  RNA editing in Arabidopsis mitochondria effects 441 C to U changes in ORFs.

Authors:  P Giegé; A Brennicke
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-21       Impact factor: 11.205

9.  cis Recognition elements in plant mitochondrion RNA editing.

Authors:  J C Farré; G Leon; X Jordana; A Araya
Journal:  Mol Cell Biol       Date:  2001-10       Impact factor: 4.272

10.  Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.

Authors:  Claire Lurin; Charles Andrés; Sébastien Aubourg; Mohammed Bellaoui; Frédérique Bitton; Clémence Bruyère; Michel Caboche; Cédrig Debast; José Gualberto; Beate Hoffmann; Alain Lecharny; Monique Le Ret; Marie-Laure Martin-Magniette; Hakim Mireau; Nemo Peeters; Jean-Pierre Renou; Boris Szurek; Ludivine Taconnat; Ian Small
Journal:  Plant Cell       Date:  2004-07-21       Impact factor: 11.277

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  23 in total

1.  Testing for selection on synonymous sites in plant mitochondrial DNA: the role of codon bias and RNA editing.

Authors:  Daniel B Sloan; Douglas R Taylor
Journal:  J Mol Evol       Date:  2010-04-28       Impact factor: 2.395

2.  An in vitro RNA editing system from cauliflower mitochondria: editing site recognition parameters can vary in different plant species.

Authors:  Julia Neuwirt; Mizuki Takenaka; Johannes A van der Merwe; Axel Brennicke
Journal:  RNA       Date:  2005-08-30       Impact factor: 4.942

3.  Patterns of partial RNA editing in mitochondrial genes of Beta vulgaris.

Authors:  Jeffrey P Mower; Jeffrey D Palmer
Journal:  Mol Genet Genomics       Date:  2006-07-22       Impact factor: 3.291

4.  Multiple specificity recognition motifs enhance plant mitochondrial RNA editing in vitro.

Authors:  Daniil Verbitskiy; Johannes A van der Merwe; Anja Zehrmann; Axel Brennicke; Mizuki Takenaka
Journal:  J Biol Chem       Date:  2008-07-01       Impact factor: 5.157

Review 5.  Molecular and Functional Diversity of RNA Editing in Plant Mitochondria.

Authors:  Wei Tang; Caroline Luo
Journal:  Mol Biotechnol       Date:  2018-12       Impact factor: 2.695

6.  Formation of the Arabidopsis pentatricopeptide repeat family.

Authors:  Eric Rivals; Clémence Bruyère; Claire Toffano-Nioche; Alain Lecharny
Journal:  Plant Physiol       Date:  2006-07       Impact factor: 8.340

7.  Ecotype allelic variation in C-to-U editing extent of a mitochondrial transcript identifies RNA-editing quantitative trait loci in Arabidopsis.

Authors:  Stéphane Bentolila; Anne-Laure Chateigner-Boutin; Maureen R Hanson
Journal:  Plant Physiol       Date:  2005-11-11       Impact factor: 8.340

8.  Plastid mRNAs are neither spliced nor edited in maize and cauliflower mitochondrial in organello systems.

Authors:  Nina Bolle; Inga Hinrichsen; Frank Kempken
Journal:  RNA       Date:  2007-10-19       Impact factor: 4.942

9.  Intron RNA editing is essential for splicing in plant mitochondria.

Authors:  Benoît Castandet; David Choury; Dominique Bégu; Xavier Jordana; Alejandro Araya
Journal:  Nucleic Acids Res       Date:  2010-07-08       Impact factor: 16.971

10.  An RNA recognition motif-containing protein is required for plastid RNA editing in Arabidopsis and maize.

Authors:  Tao Sun; Arnaud Germain; Ludovic Giloteaux; Kamel Hammani; Alice Barkan; Maureen R Hanson; Stéphane Bentolila
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-04       Impact factor: 11.205

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