Literature DB >> 15582395

Searching for new allosteric sites in enzymes.

Jeanne A Hardy1, James A Wells.   

Abstract

The discovery of new allosteric sites generates opportunities for the identification of novel pharmaceuticals and increases our understanding of basic biological processes. Increasingly, allosteric sites are being discovered in various families of proteins by several methods, paving the way for the development of entirely new classes of drugs with a wide range of chemotypes. New allosteric sites in enzymes have been discovered both incidentally and by directed means, and the mechanisms by which allosteric activation and inhibition occur at these sites have been investigated. By exploring recent structurally well-characterized examples, trends begin to emerge for both the modes of binding and mechanisms of inhibition.

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Year:  2004        PMID: 15582395     DOI: 10.1016/j.sbi.2004.10.009

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  109 in total

Review 1.  Allosteric regulation of protease activity by small molecules.

Authors:  Aimee Shen
Journal:  Mol Biosyst       Date:  2010-06-10

2.  Equilibrium fluctuations of a single folded protein reveal a multitude of potential cryptic allosteric sites.

Authors:  Gregory R Bowman; Phillip L Geissler
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-02       Impact factor: 11.205

3.  Sequence and structure continuity of evolutionary importance improves protein functional site discovery and annotation.

Authors:  A D Wilkins; R Lua; S Erdin; R M Ward; O Lichtarge
Journal:  Protein Sci       Date:  2010-07       Impact factor: 6.725

4.  Automated electron-density sampling reveals widespread conformational polymorphism in proteins.

Authors:  P Therese Lang; Ho-Leung Ng; James S Fraser; Jacob E Corn; Nathaniel Echols; Mark Sales; James M Holton; Tom Alber
Journal:  Protein Sci       Date:  2010-07       Impact factor: 6.725

5.  Domain motion and interdomain hot spots in a multidomain enzyme.

Authors:  Gwo-Yu Chuang; Ritcha Mehra-Chaudhary; Chi-Ho Ngan; Brandon S Zerbe; Dima Kozakov; Sandor Vajda; Lesa J Beamer
Journal:  Protein Sci       Date:  2010-09       Impact factor: 6.725

6.  Detection of secondary binding sites in proteins using fragment screening.

Authors:  R Frederick Ludlow; Marcel L Verdonk; Harpreet K Saini; Ian J Tickle; Harren Jhoti
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-11       Impact factor: 11.205

Review 7.  Small molecule epigenetic inhibitors targeted to histone lysine methyltransferases and demethylases.

Authors:  Zhanxin Wang; Dinshaw J Patel
Journal:  Q Rev Biophys       Date:  2013-09-02       Impact factor: 5.318

8.  Whence cometh the allosterome?

Authors:  Janet E Lindsley; Jared Rutter
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-03       Impact factor: 11.205

9.  Selection of allosteric beta-lactamase mutants featuring an activity regulation by transition metal ions.

Authors:  Pascale Mathonet; Humberto Barrios; Patrice Soumillion; Jacques Fastrez
Journal:  Protein Sci       Date:  2006-09-08       Impact factor: 6.725

10.  Using affinity chromatography to engineer and characterize pH-dependent protein switches.

Authors:  Martin Sagermann; Richard R Chapleau; Elaine DeLorimier; Margarida Lei
Journal:  Protein Sci       Date:  2009-01       Impact factor: 6.725

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