Literature DB >> 15581813

Detection and analysis of statistical differences in anatomical shape.

Polina Golland1, W Eric L Grimson, Martha E Shenton, Ron Kikinis.   

Abstract

We present a computational framework for image-based analysis and interpretation of statistical differences in anatomical shape between populations. Applications of such analysis include understanding developmental and anatomical aspects of disorders when comparing patients versus normal controls, studying morphological changes caused by aging, or even differences in normal anatomy, for example, differences between genders. Once a quantitative description of organ shape is extracted from input images, the problem of identifying differences between the two groups can be reduced to one of the classical questions in machine learning of constructing a classifier function for assigning new examples to one of the two groups while making as few misclassifications as possible. The resulting classifier must be interpreted in terms of shape differences between the two groups back in the image domain. We demonstrate a novel approach to such interpretation that allows us to argue about the identified shape differences in anatomically meaningful terms of organ deformation. Given a classifier function in the feature space, we derive a deformation that corresponds to the differences between the two classes while ignoring shape variability within each class. Based on this approach, we present a system for statistical shape analysis using distance transforms for shape representation and the support vector machines learning algorithm for the optimal classifier estimation and demonstrate it on artificially generated data sets, as well as real medical studies.

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Mesh:

Year:  2005        PMID: 15581813      PMCID: PMC2768070          DOI: 10.1016/j.media.2004.07.003

Source DB:  PubMed          Journal:  Med Image Anal        ISSN: 1361-8415            Impact factor:   8.545


  8 in total

1.  Segmentation, registration, and measurement of shape variation via image object shape.

Authors:  S M Pizer; D S Fritsch; P A Yushkevich; V E Johnson; E L Chaney
Journal:  IEEE Trans Med Imaging       Date:  1999-10       Impact factor: 10.048

2.  Shape differences in the corpus callosum in first-episode schizophrenia and first-episode psychotic affective disorder.

Authors:  Melissa Frumin; Polina Golland; Ron Kikinis; Yoshio Hirayasu; Dean F Salisbury; John Hennen; Chandlee C Dickey; Mark Anderson; Ferenc A Jolesz; W Eric L Grimson; Robert W McCarley; Martha E Shenton
Journal:  Am J Psychiatry       Date:  2002-05       Impact factor: 18.112

3.  Amygdala-hippocampal shape differences in schizophrenia: the application of 3D shape models to volumetric MR data.

Authors:  Martha E Shenton; Guido Gerig; Robert W McCarley; Gábor Székely; Ron Kikinis
Journal:  Psychiatry Res       Date:  2002-08-20       Impact factor: 3.222

4.  Abnormalities of the left temporal lobe and thought disorder in schizophrenia. A quantitative magnetic resonance imaging study.

Authors:  M E Shenton; R Kikinis; F A Jolesz; S D Pollak; M LeMay; C G Wible; H Hokama; J Martin; D Metcalf; M Coleman
Journal:  N Engl J Med       Date:  1992-08-27       Impact factor: 91.245

5.  Hippocampal morphometry in schizophrenia by high dimensional brain mapping.

Authors:  J G Csernansky; S Joshi; L Wang; J W Haller; M Gado; J P Miller; U Grenander; M I Miller
Journal:  Proc Natl Acad Sci U S A       Date:  1998-09-15       Impact factor: 11.205

6.  Segmentation of 2-D and 3-D objects from MRI volume data using constrained elastic deformations of flexible Fourier contour and surface models.

Authors:  G Székely; A Kelemen; C Brechbühler; G Gerig
Journal:  Med Image Anal       Date:  1996-03       Impact factor: 8.545

7.  Landmark methods for forms without landmarks: morphometrics of group differences in outline shape.

Authors:  F L Bookstein
Journal:  Med Image Anal       Date:  1997-04       Impact factor: 8.545

8.  A computerized approach for morphological analysis of the corpus callosum.

Authors:  C Davatzikos; M Vaillant; S M Resnick; J L Prince; S Letovsky; R N Bryan
Journal:  J Comput Assist Tomogr       Date:  1996 Jan-Feb       Impact factor: 1.826

  8 in total
  24 in total

1.  Penalized Fisher Discriminant Analysis and Its Application to Image-Based Morphometry.

Authors:  Wei Wang; Yilin Mo; John A Ozolek; Gustavo K Rohde
Journal:  Pattern Recognit Lett       Date:  2011-11-01       Impact factor: 3.756

2.  Shape Comparison Using Perturbing Shape Registration.

Authors:  Yifeng Jiang; Erin Edmiston; Fei Wang; Hilary P Blumberg; Lawrence H Staib; Xenophon Papademetris
Journal:  Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit       Date:  2009-06-20

Review 3.  Content-based image retrieval in radiology: current status and future directions.

Authors:  Ceyhun Burak Akgül; Daniel L Rubin; Sandy Napel; Christopher F Beaulieu; Hayit Greenspan; Burak Acar
Journal:  J Digit Imaging       Date:  2011-04       Impact factor: 4.056

4.  Mixture of segmenters with discriminative spatial regularization and sparse weight selection.

Authors:  Ting Chen; Baba C Vemuri; Anand Rangarajan; Stephan J Eisenschenk
Journal:  Med Image Comput Comput Assist Interv       Date:  2011

5.  Characterizing the shape of anatomical structures with Poisson's equation.

Authors:  Haissam Haidar; Sylvain Bouix; James J Levitt; Robert W McCarley; Martha E Shenton; Janet S Soul
Journal:  IEEE Trans Med Imaging       Date:  2006-10       Impact factor: 10.048

6.  Using the logarithm of odds to define a vector space on probabilistic atlases.

Authors:  Kilian M Pohl; John Fisher; Sylvain Bouix; Martha Shenton; Robert W McCarley; W Eric L Grimson; Ron Kikinis; William M Wells
Journal:  Med Image Anal       Date:  2007-06-22       Impact factor: 8.545

7.  Label space: a coupled multi-shape representation.

Authors:  James Malcolm; Yogesh Rathi; Martha E Shenton; Allen Tannenbaum
Journal:  Med Image Comput Comput Assist Interv       Date:  2008

8.  Multivariate linear regression of high-dimensional fMRI data with multiple target variables.

Authors:  Giancarlo Valente; Agustin Lage Castellanos; Gianluca Vanacore; Elia Formisano
Journal:  Hum Brain Mapp       Date:  2013-07-24       Impact factor: 5.038

9.  Learning-based 3T brain MRI segmentation with guidance from 7T MRI labeling.

Authors:  Minghui Deng; Renping Yu; Li Wang; Feng Shi; Pew-Thian Yap; Dinggang Shen
Journal:  Med Phys       Date:  2016-12       Impact factor: 4.071

10.  Segmentation of cerebrovascular pathologies in stroke patients with spatial and shape priors.

Authors:  Adrian Vasile Dalca; Ramesh Sridharan; Lisa Cloonan; Kaitlin M Fitzpatrick; Allison Kanakis; Karen L Furie; Jonathan Rosand; Ona Wu; Mert Sabuncu; Natalia S Rost; Polina Golland
Journal:  Med Image Comput Comput Assist Interv       Date:  2014
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