Literature DB >> 15575978

Chromatin architecture and gene expression in Escherichia coli.

Hanni Willenbrock1, David W Ussery.   

Abstract

Two recent genome-scale analyses underscore the importance of DNA topology and chromatin structure in regulating transcription in Escherichia coli.

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Year:  2004        PMID： 15575978      PMCID： PMC545790          DOI： 10.1186/gb-2004-5-12-252

Source DB:  PubMed          Journal:  Genome Biol        ISSN： 1474-7596            Impact factor:   13.583


  21 in total

1.  Upstream binding factor association induces large-scale chromatin decondensation.

Authors:  Danyang Chen; Andrew S Belmont; Sui Huang
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-11       Impact factor: 11.205

Review 2.  DNA supercoiling and environmental regulation of gene expression in pathogenic bacteria.

Authors:  C J Dorman
Journal:  Infect Immun       Date:  1991-03       Impact factor: 3.441

3.  Modulation of gene expression through chromosomal positioning in Escherichia coli.

Authors:  Carolina Sousa; Victor de Lorenzo; Angel Cebolla
Journal:  Microbiology (Reading)       Date:  1997-06       Impact factor: 2.777

4.  Sequence periodicities in chicken nucleosome core DNA.

Authors:  S C Satchwell; H R Drew; A A Travers
Journal:  J Mol Biol       Date:  1986-10-20       Impact factor: 5.469

5.  On the structure of the folded chromosome of Escherichia coli.

Authors:  A Worcel; E Burgi
Journal:  J Mol Biol       Date:  1972-11-14       Impact factor: 5.469

6.  Topoisomerase mutations affect the relative abundance of many Escherichia coli proteins.

Authors:  T R Steck; R J Franco; J Y Wang; K Drlica
Journal:  Mol Microbiol       Date:  1993-11       Impact factor: 3.501

Review 7.  DNA supercoiling: another level for regulating gene expression.

Authors:  G R Smith
Journal:  Cell       Date:  1981-06       Impact factor: 41.582

8.  Environmental regulation of Salmonella typhi invasion-defective mutants.

Authors:  G J Leclerc; C Tartera; E S Metcalf
Journal:  Infect Immun       Date:  1998-02       Impact factor: 3.441

9.  Chromosomes in living Escherichia coli cells are segregated into domains of supercoiling.

Authors:  R R Sinden; D E Pettijohn
Journal:  Proc Natl Acad Sci U S A       Date:  1981-01       Impact factor: 11.205

10.  Spatial patterns of transcriptional activity in the chromosome of Escherichia coli.

Authors:  Kyeong Soo Jeong; Jaeyong Ahn; Arkady B Khodursky
Journal:  Genome Biol       Date:  2004-10-27       Impact factor: 13.583
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  20 in total

Review 1.  Organization of supercoil domains and their reorganization by transcription.

Authors:  Shuang Deng; Richard A Stein; N Patrick Higgins
Journal:  Mol Microbiol       Date:  2005-09       Impact factor: 3.501

2.  B-DNA under stress: over- and untwisting of DNA during molecular dynamics simulations.

Authors:  Srinivasaraghavan Kannan; Kai Kohlhoff; Martin Zacharias
Journal:  Biophys J       Date:  2006-07-21       Impact factor: 4.033

3.  Sequence-independent and reversible photocontrol of transcription/expression systems using a photosensitive nucleic acid binder.

Authors:  André Estévez-Torres; Cécile Crozatier; Antoine Diguet; Tomoaki Hara; Hirohide Saito; Kenichi Yoshikawa; Damien Baigl
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-14       Impact factor: 11.205

4.  ATF1 modulates the heat shock response by regulating the stress-inducible heat shock factor 1 transcription complex.

Authors:  Ryosuke Takii; Mitsuaki Fujimoto; Ke Tan; Eiichi Takaki; Naoki Hayashida; Ryuichiro Nakato; Katsuhiko Shirahige; Akira Nakai
Journal:  Mol Cell Biol       Date:  2014-10-13       Impact factor: 4.272

5.  Modeling Three-Dimensional Chromosome Structures Using Gene Expression Data.

Authors:  Guanghua Xiao; Xinlei Wang; Arkady B Khodursky
Journal:  J Am Stat Assoc       Date:  2011-03       Impact factor: 5.033

6.  Classification of topological domains based on gene expression and regulation.

Authors:  Jingjing Zhao; Hongbo Shi; Nadav Ahituv
Journal:  Genome       Date:  2013-09-04       Impact factor: 2.166

7.  Chromosomal periodicity and positional networks of genes in Escherichia coli.

Authors:  Anthony Mathelier; Alessandra Carbone
Journal:  Mol Syst Biol       Date:  2010-05-11       Impact factor: 11.429

8.  Optimization of gene expression through divergent mutational paths.

Authors:  Hsin-Hung Chou; Christopher J Marx
Journal:  Cell Rep       Date:  2012-02-02       Impact factor: 9.423

9.  Homeostatic regulation of supercoiling sensitivity coordinates transcription of the bacterial genome.

Authors:  Nicolas Blot; Ramesh Mavathur; Marcel Geertz; Andrew Travers; Georgi Muskhelishvili
Journal:  EMBO Rep       Date:  2006-06-16       Impact factor: 8.807

Review 10.  Regulation by transcription factors in bacteria: beyond description.

Authors:  Enrique Balleza; Lucia N López-Bojorquez; Agustino Martínez-Antonio; Osbaldo Resendis-Antonio; Irma Lozada-Chávez; Yalbi I Balderas-Martínez; Sergio Encarnación; Julio Collado-Vides
Journal:  FEMS Microbiol Rev       Date:  2009-01       Impact factor: 16.408
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