Literature DB >> 15571389

Correlated C-C and C-O bond conformations in saccharide hydroxymethyl groups: parametrization and application of redundant 1H-1H, 13C-1H, and 13C-13C NMR J-couplings.

Christophe Thibaudeau1, Roland Stenutz, Brian Hertz, Thomas Klepach, Shikai Zhao, Qingquan Wu, Ian Carmichael, Anthony S Serianni.   

Abstract

Methyl alpha- and beta-pyranosides of d-glucose and d-galactose 1-4 were prepared containing single sites of (13)C-enrichment at C4, C5, and C6 (12 compounds), and (1)H and (13)C[(1)H] NMR spectra were obtained to determine a complete set of J-couplings ((1)J, (2)J, and (3)J) involving the labeled carbon and nearby protons and carbons within the exocyclic hydroxymethyl group (CH(2)OH) of each compound. In parallel theoretical studies, the dependencies of (1)J, (2)J, and (3)J involving (1)H and (13)C on the C5-C6 (omega) and C6-O6 (theta;) torsion angles in aldohexopyranoside model compounds were computed using density functional theory (DFT) and a special basis set designed to reliably recover the Fermi contact contribution to the coupling. Complete hypersurfaces for (1)J(C5,C6), (2)J(C5,H6)(R), (2)J(C5,H6)(S), (2)J(C6,H5), (2)J(C4,C6), (3)J(C4,H6)(R), (3)J(C4,H6)(S), and (3)J(C6,H4), as well as (2)J(H6)(R)(,H6)(S), (3)J(H5,H6)(R), and (3)J(H5,H6)(S), were obtained and used to parametrize new equations correlating these couplings to omega and/or theta;. DFT-computed couplings were also tested for accuracy by measuring J-couplings in (13)C-labeled 4,6-O-ethylidene derivatives of d-glucose and d-galactose in which values of omega and theta; were constrained. Using a new computer program, Chymesa, designed to utilize multiple J-couplings sensitive to exocyclic CH(2)OH conformation, the ensemble of experimental couplings observed in 1-4 were analyzed to yield preferred rotamer populations about omega and theta;. Importantly, due to the sensitivity of some couplings, most notably (2)J(H6)(R)(,H6)(S), (2)J(C5,H6)(R), and (2)J(C5,H6)(S), to both omega and theta;, unique information on correlated conformation about both torsion angles was obtained. The latter treatment represents a means of evaluating correlated conformation in 1,6-linked oligosaccharides, since psi and theta; are redundant in these linkages. In the latter regard, multiple, redundant scalar couplings originating from both sides of the glycosidic linkage can be used collectively to evaluate conformational correlations between psi/theta; and C5-C6 bond rotamers.

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Year:  2004        PMID: 15571389     DOI: 10.1021/ja0306718

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  19 in total

Review 1.  Molecular simulations of carbohydrates and protein-carbohydrate interactions: motivation, issues and prospects.

Authors:  Elisa Fadda; Robert J Woods
Journal:  Drug Discov Today       Date:  2010-06-08       Impact factor: 7.851

2.  Co-crystals of 3-deoxy-3-fluoro-α-D-glucopyranose and 3-deoxy-3-fluoro-β-D-glucopyranose.

Authors:  Wenhui Zhang; Allen G Oliver; Anthony S Serianni
Journal:  Acta Crystallogr C       Date:  2010-10-21       Impact factor: 1.172

3.  O-Acetyl Side-Chains in Monosaccharides: Redundant NMR Spin-Couplings and Statistical Models for Acetate Ester Conformational Analysis.

Authors:  Toby Turney; Qingfeng Pan; Luke Sernau; Ian Carmichael; Wenhui Zhang; Xiaocong Wang; Robert J Woods; Anthony S Serianni
Journal:  J Phys Chem B       Date:  2016-12-21       Impact factor: 2.991

Review 4.  Computational NMR of Carbohydrates: Theoretical Background, Applications, and Perspectives.

Authors:  Leonid B Krivdin
Journal:  Molecules       Date:  2021-04-22       Impact factor: 4.411

5.  A non-Karplus effect: evidence from phosphorus heterocycles and DFT calculations of the dependence of vicinal phosphorus-hydrogen NMR coupling constants on lone-pair conformation.

Authors:  William H Hersh; Sherrell T Lam; Daniel J Moskovic; Antonios J Panagiotakis
Journal:  J Org Chem       Date:  2012-05-23       Impact factor: 4.354

6.  Conformational Populations of β-(1→4) O-Glycosidic Linkages Using Redundant NMR J-Couplings and Circular Statistics.

Authors:  Wenhui Zhang; Toby Turney; Reagan Meredith; Qingfeng Pan; Luke Sernau; Xiaocong Wang; Xiaosong Hu; Robert J Woods; Ian Carmichael; Anthony S Serianni
Journal:  J Phys Chem B       Date:  2017-03-30       Impact factor: 2.991

7.  Stereospecific synthesis of methyl 2-amino-2-deoxy-(6S)-deuterio-α,β-d-glucopyranoside and methyl 2,6-diamino-2,6-dideoxy-(6R)-deuterio-α,β-d-glucopyranoside: Side chain conformations of the 2-amino-2-deoxy and 2,6-diamino-2,6-dideoxyglucopyranosides.

Authors:  Takayuki Kato; Andrea Vasella; David Crich
Journal:  Carbohydr Res       Date:  2017-05-19       Impact factor: 2.104

8.  Additive empirical force field for hexopyranose monosaccharides.

Authors:  Olgun Guvench; Shannon N Greene; Ganesh Kamath; John W Brady; Richard M Venable; Richard W Pastor; Alexander D Mackerell
Journal:  J Comput Chem       Date:  2008-11-30       Impact factor: 3.376

9.  Pathways and populations: stereoelectronic insights into the exocyclic torsion of 5-(hydroxymethyl)tetrahydropyran.

Authors:  H Lee Woodcock; Bernard R Brooks; Richard W Pastor
Journal:  J Am Chem Soc       Date:  2008-04-29       Impact factor: 15.419

Review 10.  Developments in the Karplus equation as they relate to the NMR coupling constants of carbohydrates.

Authors:  Bruce Coxon
Journal:  Adv Carbohydr Chem Biochem       Date:  2009       Impact factor: 12.200

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