Literature DB >> 15568993

Comparative genomic structure of prokaryotes.

Stephen D Bentley1, Julian Parkhill.   

Abstract

Recent advances in DNA-sequencing technologies have made available an enormous resource of data for the study of bacterial genomes. The broad sample of complete genomes currently available allows us to look at variation in the gross features and characteristics of genomes while the detail of the sequences reveal some of the mechanisms by which these genomes evolve. This review aims to describe bacterial genome structures according to current knowledge and proposed hypotheses. We also describe examples where mechanisms of genome evolution have acted in the adaptation of bacterial species to particular niches.

Mesh:

Year:  2004        PMID: 15568993     DOI: 10.1146/annurev.genet.38.072902.094318

Source DB:  PubMed          Journal:  Annu Rev Genet        ISSN: 0066-4197            Impact factor:   16.830


  129 in total

Review 1.  Extreme genome reduction in symbiotic bacteria.

Authors:  John P McCutcheon; Nancy A Moran
Journal:  Nat Rev Microbiol       Date:  2011-11-08       Impact factor: 60.633

2.  Mesocosms of aquatic bacterial communities from the Cuatro Cienegas Basin (Mexico): a tool to test bacterial community response to environmental stress.

Authors:  Silvia Pajares; German Bonilla-Rosso; Michael Travisano; Luis E Eguiarte; Valeria Souza
Journal:  Microb Ecol       Date:  2012-03-30       Impact factor: 4.552

3.  TAT-pathway-dependent lipoproteins as a niche-based adaptation in prokaryotes.

Authors:  Hamsanathan Shruthi; Mohan Madan Babu; Krishnan Sankaran
Journal:  J Mol Evol       Date:  2010-03-24       Impact factor: 2.395

4.  Mushrooms: morphological complexity in the fungi.

Authors:  John W Taylor; Christopher E Ellison
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-22       Impact factor: 11.205

Review 5.  Metagenomic analyses: past and future trends.

Authors:  Carola Simon; Rolf Daniel
Journal:  Appl Environ Microbiol       Date:  2010-12-17       Impact factor: 4.792

6.  Metagenomics: Facts and Artifacts, and Computational Challenges*

Authors:  John C Wooley; Yuzhen Ye
Journal:  J Comput Sci Technol       Date:  2009-01       Impact factor: 1.571

7.  Comparison of Four Comamonas Catabolic Plasmids Reveals the Evolution of pBHB To Catabolize Haloaromatics.

Authors:  Kai Chen; Xihui Xu; Long Zhang; Zhenjiu Gou; Shunpeng Li; Shiri Freilich; Jiandong Jiang
Journal:  Appl Environ Microbiol       Date:  2015-12-18       Impact factor: 4.792

8.  Abundances, identity, and growth state of actinobacteria in mountain lakes of different UV transparency.

Authors:  Falk Warnecke; Ruben Sommaruga; Raju Sekar; Julia S Hofer; Jakob Pernthaler
Journal:  Appl Environ Microbiol       Date:  2005-09       Impact factor: 4.792

9.  Population genomics in bacteria: a case study of Staphylococcus aureus.

Authors:  Shohei Takuno; Tomoyuki Kado; Ryuichi P Sugino; Luay Nakhleh; Hideki Innan
Journal:  Mol Biol Evol       Date:  2011-10-17       Impact factor: 16.240

10.  Environments shape the nucleotide composition of genomes.

Authors:  Konrad U Foerstner; Christian von Mering; Sean D Hooper; Peer Bork
Journal:  EMBO Rep       Date:  2005-12       Impact factor: 8.807

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