Literature DB >> 15568024

The 'evolvability' of promiscuous protein functions.

Amir Aharoni1, Leonid Gaidukov, Olga Khersonsky, Stephen McQ Gould, Cintia Roodveldt, Dan S Tawfik.   

Abstract

How proteins with new functions (e.g., drug or antibiotic resistance or degradation of man-made chemicals) evolve in a matter of months or years is still unclear. This ability is dependent on the induction of new phenotypic traits by a small number of mutations (plasticity). But mutations often have deleterious effects on functions that are essential for survival. How are these seemingly conflicting demands met at the single-protein level? Results from directed laboratory evolution experiments indicate that the evolution of a new function is driven by mutations that have little effect on the native function but large effects on the promiscuous functions that serve as starting point. Thus, an evolving protein can initially acquire increased fitness for a new function without losing its original function. Gene duplication and the divergence of a completely new protein may then follow.

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Year:  2004        PMID: 15568024     DOI: 10.1038/ng1482

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  269 in total

1.  Cryptic genetic variation promotes rapid evolutionary adaptation in an RNA enzyme.

Authors:  Eric J Hayden; Evandro Ferrada; Andreas Wagner
Journal:  Nature       Date:  2011-06-02       Impact factor: 49.962

2.  Enzyme functional evolution through improved catalysis of ancestrally nonpreferred substrates.

Authors:  Ruiqi Huang; Frank Hippauf; Diana Rohrbeck; Maria Haustein; Katrin Wenke; Janie Feike; Noah Sorrelle; Birgit Piechulla; Todd J Barkman
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-06       Impact factor: 11.205

3.  The effect of functional compensation among duplicate genes can constrain their evolutionary divergence.

Authors:  Joseph Esfandiar Hannon Bozorgmehr
Journal:  J Genet       Date:  2012       Impact factor: 1.166

4.  Promiscuous restriction is a cellular defense strategy that confers fitness advantage to bacteria.

Authors:  Kommireddy Vasu; Easa Nagamalleswari; Valakunja Nagaraja
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-16       Impact factor: 11.205

5.  Environmental change exposes beneficial epistatic interactions in a catalytic RNA.

Authors:  Eric J Hayden; Andreas Wagner
Journal:  Proc Biol Sci       Date:  2012-06-20       Impact factor: 5.349

Review 6.  Mutational effects and the evolution of new protein functions.

Authors:  Misha Soskine; Dan S Tawfik
Journal:  Nat Rev Genet       Date:  2010-08       Impact factor: 53.242

7.  Combining metabolic and protein engineering of a terpenoid biosynthetic pathway for overproduction and selectivity control.

Authors:  Effendi Leonard; Parayil Kumaran Ajikumar; Kelly Thayer; Wen-Hai Xiao; Jeffrey D Mo; Bruce Tidor; Gregory Stephanopoulos; Kristala L J Prather
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-19       Impact factor: 11.205

8.  Visualizing high error levels during gene expression in living bacterial cells.

Authors:  Mor Meyerovich; Gideon Mamou; Sigal Ben-Yehuda
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-07       Impact factor: 11.205

9.  High tolerance to simultaneous active-site mutations in TEM-1 beta-lactamase: Distinct mutational paths provide more generalized beta-lactam recognition.

Authors:  Pierre-Yves De Wals; Nicolas Doucet; Joelle N Pelletier
Journal:  Protein Sci       Date:  2009-01       Impact factor: 6.725

Review 10.  Enzyme (re)design: lessons from natural evolution and computation.

Authors:  John A Gerlt; Patricia C Babbitt
Journal:  Curr Opin Chem Biol       Date:  2009-02-23       Impact factor: 8.822

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