Literature DB >> 15558050

Structure of a purine-purine wobble base pair in the decoding center of the ribosome.

Frank V Murphy1, V Ramakrishnan.   

Abstract

Here we report the crystal structures of I.C and I.A wobble base pairs in the context of the ribosomal decoding center, clearly showing that the I.A base pair is of an I(anti).A(anti) conformation, as predicted by Crick. Additionally, the structures enable the observation of changes in the anticodon to allow purine-purine base pairing, the 'widest' base pair geometry allowed in the wobble position.

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Year:  2004        PMID: 15558050     DOI: 10.1038/nsmb866

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  76 in total

1.  Role of wobble base pair geometry for codon degeneracy: purine-type bases at the anticodon wobble position.

Authors:  Gunajyoti Das; R H Duncan Lyngdoh
Journal:  J Mol Model       Date:  2012-03-08       Impact factor: 1.810

Review 2.  Evolutionary optimization of speed and accuracy of decoding on the ribosome.

Authors:  Ingo Wohlgemuth; Corinna Pohl; Joerg Mittelstaet; Andrey L Konevega; Marina V Rodnina
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-10-27       Impact factor: 6.237

3.  Rationalization and prediction of selective decoding of pseudouridine-modified nonsense and sense codons.

Authors:  Marc Parisien; Chengqi Yi; Tao Pan
Journal:  RNA       Date:  2012-01-26       Impact factor: 4.942

4.  Control of translation efficiency in yeast by codon-anticodon interactions.

Authors:  Daniel P Letzring; Kimberly M Dean; Elizabeth J Grayhack
Journal:  RNA       Date:  2010-10-22       Impact factor: 4.942

5.  Selection on GGU and CGU codons in the high expression genes in bacteria.

Authors:  Siddhartha Sankar Satapathy; Bhesh Raj Powdel; Malay Dutta; Alak Kumar Buragohain; Suvendra Kumar Ray
Journal:  J Mol Evol       Date:  2013-11-23       Impact factor: 2.395

6.  Helix 69 is key for uniformity during substrate selection on the ribosome.

Authors:  Rodrigo F Ortiz-Meoz; Rachel Green
Journal:  J Biol Chem       Date:  2011-05-27       Impact factor: 5.157

Review 7.  A critical analysis of codon optimization in human therapeutics.

Authors:  Vincent P Mauro; Stephen A Chappell
Journal:  Trends Mol Med       Date:  2014-09-25       Impact factor: 11.951

8.  Importance of a tRNA anticodon loop modification and a conserved, noncanonical anticodon stem pairing in tRNACGGProfor decoding

Authors:  Ha An Nguyen; Eric D Hoffer; Christine M Dunham
Journal:  J Biol Chem       Date:  2019-02-19       Impact factor: 5.157

9.  Fingerprints of Modified RNA Bases from Deep Sequencing Profiles.

Authors:  Anna M Kietrys; Willem A Velema; Eric T Kool
Journal:  J Am Chem Soc       Date:  2017-11-17       Impact factor: 15.419

10.  Unconventional decoding of the AUA codon as methionine by mitochondrial tRNAMet with the anticodon f5CAU as revealed with a mitochondrial in vitro translation system.

Authors:  Chie Takemoto; Linda L Spremulli; Lisa A Benkowski; Takuya Ueda; Takashi Yokogawa; Kimitsuna Watanabe
Journal:  Nucleic Acids Res       Date:  2009-01-16       Impact factor: 16.971

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