| Literature DB >> 15764665 |
Abstract
We determine both barrier heights and prefactors for protein folding by applying constraints determined from experimental rate measurements to a Kramers theory for folding rate. The theoretical values are required to match the experimental values at two conditions of temperature and denaturant that induce the same stability. Several expressions for the prefactor in the Kramers rate equation are examined: a random energy approximation, a correlated energy approximation, and an approximation using a single Arrhenius activation energy. Barriers and prefactors are generally found to be large as a result of implementing this recipe, i.e., the folding landscape is cooperative and smooth. Interestingly, a prefactor with a single Arrhenius activation energy admits no formal solution.Mesh:
Substances:
Year: 2005 PMID: 15764665 PMCID: PMC1305610 DOI: 10.1529/biophysj.104.052548
Source DB: PubMed Journal: Biophys J ISSN: 0006-3495 Impact factor: 4.033