Literature DB >> 15556974

Axis curvature and ligand induced bending in the CAP-DNA oligomers.

Surjit B Dixit, David L Beveridge.   

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Year:  2004        PMID: 15556974      PMCID: PMC1305058          DOI: 10.1529/biophysj.104.053058

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


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  13 in total

1.  Structural and thermodynamic strategies for site-specific DNA binding proteins.

Authors:  L Jen-Jacobson; L E Engler; L A Jacobson
Journal:  Structure       Date:  2000-10-15       Impact factor: 5.006

Review 2.  Molecular dynamics simulations of DNA curvature and flexibility: helix phasing and premelting.

Authors:  D L Beveridge; Surjit B Dixit; Gabriela Barreiro; Kelly M Thayer
Journal:  Biopolymers       Date:  2004-02-15       Impact factor: 2.505

3.  Assessment of the molecular dynamics structure of DNA in solution based on calculated and observed NMR NOESY volumes and dihedral angles from scalar coupling constants.

Authors:  Haribabu Arthanari; Kevin J McConnell; Richard Beger; Matthew A Young; D L Beveridge; Philip H Bolton
Journal:  Biopolymers       Date:  2003-01       Impact factor: 2.505

Review 4.  Simulation and modeling of nucleic acid structure, dynamics and interactions.

Authors:  Thomas E Cheatham
Journal:  Curr Opin Struct Biol       Date:  2004-06       Impact factor: 6.809

Review 5.  Catabolite activator protein: DNA binding and transcription activation.

Authors:  Catherine L Lawson; David Swigon; Katsuhiko S Murakami; Seth A Darst; Helen M Berman; Richard H Ebright
Journal:  Curr Opin Struct Biol       Date:  2004-02       Impact factor: 6.809

Review 6.  Structural studies of protein-nucleic acid interaction: the sources of sequence-specific binding.

Authors:  T A Steitz
Journal:  Q Rev Biophys       Date:  1990-08       Impact factor: 5.318

7.  Measurement of the DNA bend angle induced by the catabolite activator protein using Monte Carlo simulation of cyclization kinetics.

Authors:  J D Kahn; D M Crothers
Journal:  J Mol Biol       Date:  1998-02-13       Impact factor: 5.469

8.  The structure of a CAP-DNA complex having two cAMP molecules bound to each monomer.

Authors:  J M Passner; T A Steitz
Journal:  Proc Natl Acad Sci U S A       Date:  1997-04-01       Impact factor: 11.205

9.  Structure of the CAP-DNA complex at 2.5 angstroms resolution: a complete picture of the protein-DNA interface.

Authors:  G Parkinson; C Wilson; A Gunasekera; Y W Ebright; R H Ebright; R E Ebright; H M Berman
Journal:  J Mol Biol       Date:  1996-07-19       Impact factor: 5.469

10.  Crystal structure of a CAP-DNA complex: the DNA is bent by 90 degrees.

Authors:  S C Schultz; G C Shields; T A Steitz
Journal:  Science       Date:  1991-08-30       Impact factor: 47.728

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  2 in total

1.  Pre-organized structure of viral DNA at the binding-processing site of HIV-1 integrase.

Authors:  Jean-Guillaume Renisio; Sylvain Cosquer; Ilham Cherrak; Saïd El Antri; Olivier Mauffret; Serge Fermandjian
Journal:  Nucleic Acids Res       Date:  2005-04-06       Impact factor: 16.971

2.  3D-DART: a DNA structure modelling server.

Authors:  Marc van Dijk; Alexandre M J J Bonvin
Journal:  Nucleic Acids Res       Date:  2009-05-05       Impact factor: 16.971

  2 in total

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