| Literature DB >> 15555595 |
Hugo Brandão Uchôa1, Guilherme Eberhart Jorge, Nelson José Freitas Da Silveira, João Carlos Camera, Fernanda Canduri, Walter Filgueira De Azevedo.
Abstract
Parmodel is a web server for automated comparative modeling and evaluation of protein structures. The aim of this tool is to help inexperienced users to perform modeling, assessment, visualization, and optimization of protein models as well as crystallographers to evaluate structures solved experimentally. It is subdivided in four modules: Parmodel Modeling, Parmodel Assessment, Parmodel Visualization, and Parmodel Optimization. The main module is the Parmodel Modeling that allows the building of several models for a same protein in a reduced time, through the distribution of modeling processes on a Beowulf cluster. Parmodel automates and integrates the main softwares used in comparative modeling as MODELLER, Whatcheck, Procheck, Raster3D, Molscript, and Gromacs. This web server is freely accessible at .Mesh：
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Year: 2004 PMID： 15555595 DOI： 10.1016/j.bbrc.2004.10.192
Source DB: PubMed Journal: Biochem Biophys Res Commun ISSN： 0006-291X Impact factor: 3.575