Literature DB >> 15535676

OMP decarboxylase: an experimental test of electrostatic destabilization of the enzyme-substrate complex.

Brian P Callahan1, Richard Wolfenden.   

Abstract

6-Methylaminouridine 5'-phosphate (MAUMP) inhibits OMP decarboxylase (Ki = 3 x 10-6 M) maximally at pH values where its amino group is uncharged. Comparison of the chemical shift of free [7-13C]-MAUMP in solutions of varying pH, with that of the enzyme-bound species confirms that this inhibitor is bound with its amino group uncharged. This enzyme's apparent lack of affinity for a cationic substituent, located near the position that would ordinarily be occupied by the scissile carboxylate group of the substrate, does not appear to support the view that the E-S complex is destabilized by electrostatic repulsion in the ground state.

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Year:  2004        PMID: 15535676     DOI: 10.1021/ja0450049

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  9 in total

1.  Indiscriminate binding by orotidine 5'-phosphate decarboxylase of uridine 5'-phosphate derivatives with bulky anionic c6 substituents.

Authors:  Charles A Lewis; Richard Wolfenden
Journal:  Biochemistry       Date:  2007-10-30       Impact factor: 3.162

2.  Formation and stability of a vinyl carbanion at the active site of orotidine 5'-monophosphate decarboxylase: pKa of the C-6 proton of enzyme-bound UMP.

Authors:  Tina L Amyes; Bryant M Wood; Kui Chan; John A Gerlt; John P Richard
Journal:  J Am Chem Soc       Date:  2008-01-11       Impact factor: 15.419

3.  Investigating the role of a backbone to substrate hydrogen bond in OMP decarboxylase using a site-specific amide to ester substitution.

Authors:  Bijoy J Desai; Yuki Goto; Alessandro Cembran; Alexander A Fedorov; Steven C Almo; Jiali Gao; Hiroaki Suga; John A Gerlt
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-01       Impact factor: 11.205

4.  Substrate distortion contributes to the catalysis of orotidine 5'-monophosphate decarboxylase.

Authors:  Masahiro Fujihashi; Toyokazu Ishida; Shingo Kuroda; Lakshmi P Kotra; Emil F Pai; Kunio Miki
Journal:  J Am Chem Soc       Date:  2013-11-11       Impact factor: 15.419

5.  Implications for an imidazol-2-yl carbene intermediate in the rhodanase-catalyzed C-S bond formation reaction of anaerobic ergothioneine biosynthesis.

Authors:  Ronghai Cheng; Rui Lai; Chao Peng; Juan Lopez; Zhihong Li; Nathchar Naowarojna; Kelin Li; Christina Wong; Norman Lee; Stephen A Whelan; Lu Qiao; Mark W Grinstaff; Jiangyun Wang; Qiang Cui; Pinghua Liu
Journal:  ACS Catal       Date:  2021-03-01       Impact factor: 13.084

6.  Ground state destabilization from a positioned general base in the ketosteroid isomerase active site.

Authors:  Eliza A Ruben; Jason P Schwans; Matthew Sonnett; Aditya Natarajan; Ana Gonzalez; Yingssu Tsai; Daniel Herschlag
Journal:  Biochemistry       Date:  2013-01-30       Impact factor: 3.162

7.  Catalysis in Enzymatic Decarboxylations: Comparison of Selected Cofactor-dependent and Cofactor-independent Examples.

Authors:  Frank Jordan; Hetalben Patel
Journal:  ACS Catal       Date:  2013-07-05       Impact factor: 13.084

8.  Mechanism of OMP decarboxylation in orotidine 5'-monophosphate decarboxylase.

Authors:  Hao Hu; Amy Boone; Weitao Yang
Journal:  J Am Chem Soc       Date:  2008-10-08       Impact factor: 15.419

9.  Role of the Carboxylate in Enzyme-Catalyzed Decarboxylation of Orotidine 5'-Monophosphate: Transition State Stabilization Dominates Over Ground State Destabilization.

Authors:  Bogdana Goryanova; Tina L Amyes; John P Richard
Journal:  J Am Chem Soc       Date:  2019-08-14       Impact factor: 15.419

  9 in total

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