Literature DB >> 1552836

A statistical test for detecting geographic subdivision.

R R Hudson1, D D Boos, N L Kaplan.   

Abstract

A statistical test for detecting genetic differentiation of subpopulations is described that uses molecular variation in samples of DNA sequences from two or more localities. The statistical significance of the test is determined with Monte Carlo simulations. The power of the test to detect genetic differentiation in a selectively neutral Wright-Fisher island model depends on both sample size and the rates of migration, mutation, and recombination. It is found that the power of the test is substantial with samples of size 50, when 4Nm less than 10, where N is the subpopulation size and m is the fraction of migrants in each subpopulation each generation. More powerful tests are obtained with genes with recombination than with genes without recombination.

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Year:  1992        PMID: 1552836     DOI: 10.1093/oxfordjournals.molbev.a040703

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN: 0737-4038            Impact factor:   16.240


  289 in total

1.  The relationship between allozyme and chromosomal polymorphism inferred from nucleotide variation at the Acph-1 gene region of Drosophila subobscura.

Authors:  A Navarro-Sabaté; M Aguadé; C Segarra
Journal:  Genetics       Date:  1999-10       Impact factor: 4.562

2.  Unusual haplotype structure at the proximal breakpoint of In(2L)t in a natural population of Drosophila melanogaster.

Authors:  P Andolfatto; J D Wall; M Kreitman
Journal:  Genetics       Date:  1999-11       Impact factor: 4.562

Review 3.  Transition between stochastic evolution and deterministic evolution in the presence of selection: general theory and application to virology.

Authors:  I M Rouzine; A Rodrigo; J M Coffin
Journal:  Microbiol Mol Biol Rev       Date:  2001-03       Impact factor: 11.056

4.  Nucleotide polymorphism at the RpII215 gene in Drosophila subobscura. Weak selection on synonymous mutations.

Authors:  A Llopart; M Aguadé
Journal:  Genetics       Date:  2000-07       Impact factor: 4.562

5.  A new statistic for detecting genetic differentiation.

Authors:  R R Hudson
Journal:  Genetics       Date:  2000-08       Impact factor: 4.562

6.  DNA variation at the rp49 gene region of Drosophila simulans: evolutionary inferences from an unusual haplotype structure.

Authors:  J Rozas; M Gullaud; G Blandin; M Aguadé
Journal:  Genetics       Date:  2001-07       Impact factor: 4.562

7.  Short tandem-repeat polymorphism/alu haplotype variation at the PLAT locus: implications for modern human origins.

Authors:  S A Tishkoff; A J Pakstis; M Stoneking; J R Kidd; G Destro-Bisol; A Sanjantila; R B Lu; A S Deinard; G Sirugo; T Jenkins; K K Kidd; A G Clark
Journal:  Am J Hum Genet       Date:  2000-09-13       Impact factor: 11.025

8.  Comparative population genomics of maize domestication and improvement.

Authors:  Matthew B Hufford; Xun Xu; Joost van Heerwaarden; Tanja Pyhäjärvi; Jer-Ming Chia; Reed A Cartwright; Robert J Elshire; Jeffrey C Glaubitz; Kate E Guill; Shawn M Kaeppler; Jinsheng Lai; Peter L Morrell; Laura M Shannon; Chi Song; Nathan M Springer; Ruth A Swanson-Wagner; Peter Tiffin; Jun Wang; Gengyun Zhang; John Doebley; Michael D McMullen; Doreen Ware; Edward S Buckler; Shuang Yang; Jeffrey Ross-Ibarra
Journal:  Nat Genet       Date:  2012-06-03       Impact factor: 38.330

9.  Comparison of standard PCR/cloning to single genome sequencing for analysis of HIV-1 populations.

Authors:  Michael R Jordan; Mary Kearney; Sarah Palmer; Wei Shao; Frank Maldarelli; Eoin P Coakley; Colombe Chappey; Christine Wanke; John M Coffin
Journal:  J Virol Methods       Date:  2010-05-06       Impact factor: 2.014

10.  The Genomic Impacts of Drift and Selection for Hybrid Performance in Maize.

Authors:  Justin P Gerke; Jode W Edwards; Katherine E Guill; Jeffrey Ross-Ibarra; Michael D McMullen
Journal:  Genetics       Date:  2015-09-18       Impact factor: 4.562

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