Literature DB >> 15527389

Ensemble of transition states for two-state protein folding from the eigenvectors of rate matrices.

Alexander Berezhkovskii, Attila Szabo.   

Abstract

Year:  2004        PMID： 15527389     DOI： 10.1063/1.1802674

Source DB:  PubMed          Journal:  J Chem Phys        ISSN： 0021-9606            Impact factor:   3.488


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  10 in total

Review 1.  Protein folding thermodynamics and dynamics: where physics, chemistry, and biology meet.

Authors:  Eugene Shakhnovich
Journal:  Chem Rev       Date:  2006-05       Impact factor: 60.622

2.  Water pulls the strings in hydrophobic polymer collapse.

Authors:  Gerhard Hummer
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-12       Impact factor: 11.205

3.  Reactive flux and folding pathways in network models of coarse-grained protein dynamics.

Authors:  Alexander Berezhkovskii; Gerhard Hummer; Attila Szabo
Journal:  J Chem Phys       Date:  2009-05-28       Impact factor: 3.488

4.  Chemical, physical, and theoretical kinetics of an ultrafast folding protein.

Authors:  Jan Kubelka; Eric R Henry; Troy Cellmer; James Hofrichter; William A Eaton
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-25       Impact factor: 11.205

5.  A free-energy approach for all-atom protein simulation.

Authors:  Abhinav Verma; Wolfgang Wenzel
Journal:  Biophys J       Date:  2009-05-06       Impact factor: 4.033

6.  A minimum-reaction-flux solution to master-equation models of protein folding.

Authors:  Huan-Xiang Zhou
Journal:  J Chem Phys       Date:  2008-05-21       Impact factor: 3.488

7.  Diffusion maps, clustering and fuzzy Markov modeling in peptide folding transitions.

Authors:  Lilia V Nedialkova; Miguel A Amat; Ioannis G Kevrekidis; Gerhard Hummer
Journal:  J Chem Phys       Date:  2014-09-21       Impact factor: 3.488

8.  Kinetic network study of the diversity and temperature dependence of Trp-Cage folding pathways: combining transition path theory with stochastic simulations.

Authors:  Weihua Zheng; Emilio Gallicchio; Nanjie Deng; Michael Andrec; Ronald M Levy
Journal:  J Phys Chem B       Date:  2011-01-21       Impact factor: 2.991

9.  Diffusive barrier crossing rates from variationally determined eigenvalues.

Authors:  Alexander M Berezhkovskii; Irina V Gopich; Attila Szabo
Journal:  J Chem Phys       Date:  2021-07-21       Impact factor: 4.304

10.  Optimal reaction coordinate as a biomarker for the dynamics of recovery from kidney transplant.

Authors:  Sergei V Krivov; Hayley Fenton; Paul J Goldsmith; Rajendra K Prasad; Julie Fisher; Emanuele Paci
Journal:  PLoS Comput Biol       Date:  2014-06-26       Impact factor: 4.475
  10 in total

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