Literature DB >> 15522875

Monoallelic expression and asynchronous replication of p120 catenin in mouse and human cells.

Alexander A Gimelbrant1, Alexander W Ensminger, Peimin Qi, Jacob Zucker, Andrew Chess.   

Abstract

The number of autosomal mammalian genes subject to random monoallelic expression has been limited to genes highly specific to the function of chemosensory neurons or lymphocytes, making this phenomenon difficult to address systematically. Here we demonstrate that asynchronous DNA replication can be used as a marker for the identification of novel genes with monoallelic expression and identify p120 catenin, a gene involved in cell adhesion, as belonging to this class. p120 is widely expressed; its presence in available cell lines allowed us to address quantitative aspects of monoallelic expression. We show that the epigenetic choice of active allele is clonally stable and that biallelic clones express p120 at twice the level of monoallelic clones. Unlike previous reports about genes of this type, we found that expression of p120 can be monoallelic in one cell type and strictly biallelic in another. We show that in human lymphoblasts, the silencing of one allele is incomplete. These unexpected properties are likely to be wide-spread, as we show that the Tlr4 gene shares them. Identification of monoallelic expression of a nearly ubiquitous gene indicates that this type of gene regulation is more common than previously thought. This has important implications for carcinogenesis and definition of cell identity.

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Year:  2004        PMID: 15522875     DOI: 10.1074/jbc.M411283200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  30 in total

Review 1.  Random and non-random monoallelic expression.

Authors:  Andrew Chess
Journal:  Neuropsychopharmacology       Date:  2012-07-04       Impact factor: 7.853

Review 2.  Random monoallelic expression of autosomal genes: stochastic transcription and allele-level regulation.

Authors:  Björn Reinius; Rickard Sandberg
Journal:  Nat Rev Genet       Date:  2015-10-07       Impact factor: 53.242

3.  An epigenetic state associated with areas of gene duplication.

Authors:  Alexander A Gimelbrant; Andrew Chess
Journal:  Genome Res       Date:  2006-05-10       Impact factor: 9.043

4.  Accurate quantitation of allele-specific expression patterns by analysis of DNA melting.

Authors:  Sangkyun Jeong; Yoonsoo Hahn; Qi Rong; Karl Pfeifer
Journal:  Genome Res       Date:  2007-06-01       Impact factor: 9.043

Review 5.  Mechanisms and consequences of widespread random monoallelic expression.

Authors:  Andrew Chess
Journal:  Nat Rev Genet       Date:  2012-05-15       Impact factor: 53.242

6.  Sequencing newly replicated DNA reveals widespread plasticity in human replication timing.

Authors:  R Scott Hansen; Sean Thomas; Richard Sandstrom; Theresa K Canfield; Robert E Thurman; Molly Weaver; Michael O Dorschner; Stanley M Gartler; John A Stamatoyannopoulos
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-04       Impact factor: 11.205

7.  Allelic inactivation of rDNA loci.

Authors:  Sharon Schlesinger; Sara Selig; Yehudit Bergman; Howard Cedar
Journal:  Genes Dev       Date:  2009-10-15       Impact factor: 11.361

8.  Lung stem cell self-renewal relies on BMI1-dependent control of expression at imprinted loci.

Authors:  Sima J Zacharek; Christine M Fillmore; Allison N Lau; David W Gludish; Alan Chou; Joshua W K Ho; Raffaella Zamponi; Roi Gazit; Christoph Bock; Natalie Jäger; Zachary D Smith; Tae-min Kim; Arven H Saunders; Janice Wong; Joo-Hyeon Lee; Rebecca R Roach; Derrick J Rossi; Alex Meissner; Alexander A Gimelbrant; Peter J Park; Carla F Kim
Journal:  Cell Stem Cell       Date:  2011-09-02       Impact factor: 24.633

9.  Asynchronous replication and autosome-pair non-equivalence in human embryonic stem cells.

Authors:  Devkanya Dutta; Alexander W Ensminger; Jacob P Zucker; Andrew Chess
Journal:  PLoS One       Date:  2009-03-27       Impact factor: 3.240

10.  Aberrant allele-specific replication, independent of parental origin, in blood cells of cancer patients.

Authors:  Zohar A Dotan; Aviva Dotan; Jacob Ramon; Lydia Avivi
Journal:  BMC Cancer       Date:  2008-12-25       Impact factor: 4.430

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