Literature DB >> 15522455

Regulation of RNA function by aminoacylation and editing?

Renaud Geslain1, Lluís Ribas de Pouplana.   

Abstract

The chemical modification of nucleic acids is a ubiquitous phenomenon. Aminoacylation of tRNAs by aminoacyl-tRNA synthetases (ARSs) is a reaction essentially devoted to protein synthesis but it is used also as an emergency mechanism to recycle stalled ribosomes, and it is required for genome replication in some RNA viruses. In several aminoacyl-tRNA synthetases a correction mechanism known as editing is present to prevent aminoacylation errors. Genome data reveal a growing number of open reading frames encoding ARS-like proteins. This strongly suggests the existence of a widespread and nonconventional machinery for aminoacylation and editing. Here we review the different biological functions of aminoacylation and editing; also we propose an evolutionary scenario for the origin of these two reactions, and hypothesize an extant role for RNA charging and editing outside the genetic code.

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Year:  2004        PMID: 15522455     DOI: 10.1016/j.tig.2004.09.012

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  12 in total

1.  Homologs of aminoacyl-tRNA synthetases acylate carrier proteins and provide a link between ribosomal and nonribosomal peptide synthesis.

Authors:  Marko Mocibob; Nives Ivic; Silvija Bilokapic; Timm Maier; Marija Luic; Nenad Ban; Ivana Weygand-Durasevic
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-27       Impact factor: 11.205

2.  Ancestral AlaX editing enzymes for control of genetic code fidelity are not tRNA-specific.

Authors:  Eva Maria Novoa; Oscar Vargas-Rodriguez; Stefanie Lange; Yuki Goto; Hiroaki Suga; Karin Musier-Forsyth; Lluís Ribas de Pouplana
Journal:  J Biol Chem       Date:  2015-02-27       Impact factor: 5.157

3.  Molecular basis of alanine discrimination in editing site.

Authors:  Masaaki Sokabe; Ayuko Okada; Min Yao; Takashi Nakashima; Isao Tanaka
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-08       Impact factor: 11.205

Review 4.  The emerging complexity of the tRNA world: mammalian tRNAs beyond protein synthesis.

Authors:  Paul Schimmel
Journal:  Nat Rev Mol Cell Biol       Date:  2017-09-06       Impact factor: 94.444

Review 5.  tRNAs: cellular barcodes for amino acids.

Authors:  Rajat Banerjee; Shawn Chen; Kiley Dare; Marla Gilreath; Mette Praetorius-Ibba; Medha Raina; Noah M Reynolds; Theresa Rogers; Hervé Roy; Srujana S Yadavalli; Michael Ibba
Journal:  FEBS Lett       Date:  2010-01-21       Impact factor: 4.124

6.  Restoring species-specific posttransfer editing activity to a synthetase with a defunct editing domain.

Authors:  Julius SternJohn; Sanchita Hati; Paul G Siliciano; Karin Musier-Forsyth
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-05       Impact factor: 11.205

Review 7.  tRNA synthetase: tRNA aminoacylation and beyond.

Authors:  Yan Ling Joy Pang; Kiranmai Poruri; Susan A Martinis
Journal:  Wiley Interdiscip Rev RNA       Date:  2014-04-04       Impact factor: 9.957

8.  In silicio expression analysis of PKS genes isolated from Cannabis sativa L.

Authors:  Isvett J Flores-Sanchez; Huub J M Linthorst; Robert Verpoorte
Journal:  Genet Mol Biol       Date:  2010-12-01       Impact factor: 1.771

9.  Diversity of tRNA genes in eukaryotes.

Authors:  Jeffrey M Goodenbour; Tao Pan
Journal:  Nucleic Acids Res       Date:  2006-11-06       Impact factor: 16.971

10.  Optimization and characterization of tRNA-shRNA expression constructs.

Authors:  Lisa J Scherer; Richard Frank; John J Rossi
Journal:  Nucleic Acids Res       Date:  2007-04-10       Impact factor: 16.971

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