Literature DB >> 15520293

Global analysis of transcript and protein levels across the Plasmodium falciparum life cycle.

Karine G Le Roch1, Jeffrey R Johnson, Laurence Florens, Yingyao Zhou, Andrey Santrosyan, Munira Grainger, S Frank Yan, Kim C Williamson, Anthony A Holder, Daniel J Carucci, John R Yates, Elizabeth A Winzeler.   

Abstract

To investigate the role of post-transcriptional controls in the regulation of protein expression for the malaria parasite, Plasmodium falciparum, we have compared mRNA transcript and protein abundance levels for seven different stages of the parasite life cycle. A moderately high positive relationship between mRNA and protein abundance was observed for these stages; the most common discrepancy was a delay between mRNA and protein accumulation. Potentially post-transcriptionally regulated genes are identified, and families of functionally related genes were observed to share similar patterns of mRNA and protein accumulation.

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Year:  2004        PMID: 15520293      PMCID: PMC525690          DOI: 10.1101/gr.2523904

Source DB:  PubMed          Journal:  Genome Res        ISSN: 1088-9051            Impact factor:   9.043


  67 in total

Review 1.  Histone methylation versus histone acetylation: new insights into epigenetic regulation.

Authors:  J C Rice; C D Allis
Journal:  Curr Opin Cell Biol       Date:  2001-06       Impact factor: 8.382

2.  A hypergeometric probability model for protein identification and validation using tandem mass spectral data and protein sequence databases.

Authors:  Rovshan G Sadygov; John R Yates
Journal:  Anal Chem       Date:  2003-08-01       Impact factor: 6.986

3.  A method for the comprehensive proteomic analysis of membrane proteins.

Authors:  Christine C Wu; Michael J MacCoss; Kathryn E Howell; John R Yates
Journal:  Nat Biotechnol       Date:  2003-04-14       Impact factor: 54.908

4.  Differential regulation of multiple glucose transporter genes in Leishmania mexicana.

Authors:  R J Burchmore; S M Landfear
Journal:  J Biol Chem       Date:  1998-10-30       Impact factor: 5.157

5.  Glycoprotein 46 mRNA abundance is post-transcriptionally regulated during development of Leishmania chagasi promastigotes to an infectious form.

Authors:  J K Beetham; K S Myung; J J McCoy; M E Wilson; J E Donelson
Journal:  J Biol Chem       Date:  1997-07-11       Impact factor: 5.157

6.  Global analysis of protein expression in yeast.

Authors:  Sina Ghaemmaghami; Won-Ki Huh; Kiowa Bower; Russell W Howson; Archana Belle; Noah Dephoure; Erin K O'Shea; Jonathan S Weissman
Journal:  Nature       Date:  2003-10-16       Impact factor: 49.962

7.  Changes in the protein expression of yeast as a function of carbon source.

Authors:  Ji Gao; Gregory J Opiteck; Mark S Friedrichs; Ashok R Dongre; Stanley A Hefta
Journal:  J Proteome Res       Date:  2003 Nov-Dec       Impact factor: 4.466

8.  Variation in the expression of a Plasmodium falciparum protein family implicated in erythrocyte invasion.

Authors:  Helen M Taylor; Munira Grainger; Anthony A Holder
Journal:  Infect Immun       Date:  2002-10       Impact factor: 3.441

9.  Match-only integral distribution (MOID) algorithm for high-density oligonucleotide array analysis.

Authors:  Yingyao Zhou; Ruben Abagyan
Journal:  BMC Bioinformatics       Date:  2002-01-22       Impact factor: 3.169

10.  A proteomic view of the Plasmodium falciparum life cycle.

Authors:  Laurence Florens; Michael P Washburn; J Dale Raine; Robert M Anthony; Munira Grainger; J David Haynes; J Kathleen Moch; Nemone Muster; John B Sacci; David L Tabb; Adam A Witney; Dirk Wolters; Yimin Wu; Malcolm J Gardner; Anthony A Holder; Robert E Sinden; John R Yates; Daniel J Carucci
Journal:  Nature       Date:  2002-10-03       Impact factor: 49.962

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  204 in total

1.  Unraveling the ubiquitome of the human malaria parasite.

Authors:  Nadia Ponts; Anita Saraf; Duk-Won D Chung; Alona Harris; Jacques Prudhomme; Michael P Washburn; Laurence Florens; Karine G Le Roch
Journal:  J Biol Chem       Date:  2011-09-19       Impact factor: 5.157

2.  Quantitative proteomics reveals new insights into erythrocyte invasion by Plasmodium falciparum.

Authors:  Claudia Kuss; Chee Sian Gan; Karthigayan Gunalan; Zbynek Bozdech; Siu Kwan Sze; Peter Rainer Preiser
Journal:  Mol Cell Proteomics       Date:  2011-10-24       Impact factor: 5.911

3.  Systematic genetic analysis of the Plasmodium falciparum MSP7-like family reveals differences in protein expression, location, and importance in asexual growth of the blood-stage parasite.

Authors:  Madhusudan Kadekoppala; Solabomi A Ogun; Steven Howell; Ruwani S Gunaratne; Anthony A Holder
Journal:  Eukaryot Cell       Date:  2010-05-14

Review 4.  Multidimensional protein identification technology (MudPIT): technical overview of a profiling method optimized for the comprehensive proteomic investigation of normal and diseased heart tissue.

Authors:  Thomas Kislinger; Anthony O Gramolini; David H MacLennan; Andrew Emili
Journal:  J Am Soc Mass Spectrom       Date:  2005-08       Impact factor: 3.109

Review 5.  Comparative folate metabolism in humans and malaria parasites (part II): activities as yet untargeted or specific to Plasmodium.

Authors:  Alexis Nzila; Steve A Ward; Kevin Marsh; Paul F G Sims; John E Hyde
Journal:  Trends Parasitol       Date:  2005-07

Review 6.  The role of epigenetics and chromatin structure in transcriptional regulation in malaria parasites.

Authors:  Steven Abel; Karine G Le Roch
Journal:  Brief Funct Genomics       Date:  2019-09-24       Impact factor: 4.241

7.  PfSRPK1, a novel splicing-related kinase from Plasmodium falciparum.

Authors:  Aparna Dixit; Prashant K Singh; Guru Prasad Sharma; Pawan Malhotra; Pushkar Sharma
Journal:  J Biol Chem       Date:  2010-09-24       Impact factor: 5.157

8.  Proteomic analysis of cervical-vaginal fluid: identification of novel biomarkers for detection of intra-amniotic infection.

Authors:  Michael G Gravett; Archana Thomas; Kimberly A Schneider; Ashok P Reddy; Surendra Dasari; Thomas Jacob; Xinfang Lu; Matthew Rodland; Leonardo Pereira; Drew W Sadowsky; Charles T Roberts; Miles J Novy; Srinivasa R Nagalla
Journal:  J Proteome Res       Date:  2007-01       Impact factor: 4.466

9.  Co-inhibition of Plasmodium falciparum S-adenosylmethionine decarboxylase/ornithine decarboxylase reveals perturbation-specific compensatory mechanisms by transcriptome, proteome, and metabolome analyses.

Authors:  Anna C van Brummelen; Kellen L Olszewski; Daniel Wilinski; Manuel Llinás; Abraham I Louw; Lyn-Marie Birkholtz
Journal:  J Biol Chem       Date:  2008-12-10       Impact factor: 5.157

10.  A T-cell response to a liver-stage Plasmodium antigen is not boosted by repeated sporozoite immunizations.

Authors:  Sean C Murphy; Arnold Kas; Brad C Stone; Michael J Bevan
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-25       Impact factor: 11.205

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