Literature DB >> 15514066

Mutation rate and predicted phenotypic target sizes in ethylnitrosourea-treated mice.

Dorothy Concepcion1, Kevin L Seburn, Gen Wen, Wayne N Frankel, Bruce A Hamilton.   

Abstract

Chemical mutagenesis of the mouse is ongoing in several centers around the world, with varying estimates of mutation rate and number of sites mutable to phenotype. To address these questions, we sequenced approximately 9.6 Mb of DNA from G1 progeny of ethylnitrosourea-treated mice in a large, broad-spectrum screen. We identified 10 mutations at eight unique sites, including six nonsynonymous coding substitutions. This calibrates the nucleotide mutation rate for two mutagenesis centers, implies significance criteria for positional cloning efforts, and provides working estimates of effective genetic target sizes for selected phenotypes.

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Year:  2004        PMID: 15514066      PMCID: PMC1448829          DOI: 10.1534/genetics.104.029843

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.402


  23 in total

1.  Functional genetic analysis of mouse chromosome 11.

Authors:  Benjamin T Kile; Kathryn E Hentges; Amander T Clark; Hisashi Nakamura; Andrew P Salinger; Bin Liu; Neil Box; David W Stockton; Randy L Johnson; Richard R Behringer; Allan Bradley; Monica J Justice
Journal:  Nature       Date:  2003-09-04       Impact factor: 49.962

Review 2.  New approaches to understanding p53 gene tumor mutation spectra.

Authors:  M Hollstein; M Hergenhahn; Q Yang; H Bartsch; Z Q Wang; P Hainaut
Journal:  Mutat Res       Date:  1999-12-17       Impact factor: 2.433

3.  The Individual Gene in Relation to the Chromomere and the Chromosome.

Authors:  H J Muller; A A Prokofyeva
Journal:  Proc Natl Acad Sci U S A       Date:  1935-01       Impact factor: 11.205

4.  The Measurement of Gene Mutation Rate in Drosophila, Its High Variability, and Its Dependence upon Temperature.

Authors:  H J Muller
Journal:  Genetics       Date:  1928-05       Impact factor: 4.562

5.  Consed: a graphical tool for sequence finishing.

Authors:  D Gordon; C Abajian; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

6.  Automating the identification of DNA variations using quality-based fluorescence re-sequencing: analysis of the human mitochondrial genome.

Authors:  M J Rieder; S L Taylor; V O Tobe; D A Nickerson
Journal:  Nucleic Acids Res       Date:  1998-02-15       Impact factor: 16.971

7.  Spectrum of point mutations in the coding region of the hypoxanthine-guanine phosphoribosyltransferase (hprt) gene in human T-lymphocytes in vivo.

Authors:  A Podlutsky; A M Osterholm; S M Hou; A Hofmaier; B Lambert
Journal:  Carcinogenesis       Date:  1998-04       Impact factor: 4.944

8.  Shannon information theoretic computation of synonymous codon usage biases in coding regions of human and mouse genomes.

Authors:  Barry Zeeberg
Journal:  Genome Res       Date:  2002-06       Impact factor: 9.043

9.  Supermutagenicity of ethylnitrosourea in the mouse spot test: comparisons with methylnitrosourea and ethylnitrosourethane.

Authors:  L B Russell; C S Montgomery
Journal:  Mutat Res       Date:  1982-02-22       Impact factor: 2.433

10.  Mouse mutants from chemically mutagenized embryonic stem cells.

Authors:  R J Munroe; R A Bergstrom; Q Y Zheng; B Libby; R Smith; S W John; K J Schimenti; V L Browning; J C Schimenti
Journal:  Nat Genet       Date:  2000-03       Impact factor: 38.330

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  38 in total

Review 1.  Dissecting immunity by germline mutagenesis.

Authors:  Onjee Choi; Sophie Rutschmann
Journal:  Immunology       Date:  2012-10       Impact factor: 7.397

2.  Probabilistic analysis of recessive mutagenesis screen strategies.

Authors:  Jeremy D Silver; Douglas J Hilton; Melanie Bahlo; Benjamin T Kile
Journal:  Mamm Genome       Date:  2007-01-23       Impact factor: 2.957

Review 3.  Dissecting innate immunity by germline mutagenesis.

Authors:  Sophie Rutschmann; Kasper Hoebe
Journal:  Immunology       Date:  2008-01-18       Impact factor: 7.397

4.  Analysis of the MCMV resistome by ENU mutagenesis.

Authors:  Karine Crozat; Philippe Georgel; Sophie Rutschmann; Navjiwan Mann; Xin Du; Kasper Hoebe; Bruce Beutler
Journal:  Mamm Genome       Date:  2006-05       Impact factor: 2.957

Review 5.  After GWAS: mice to the rescue?

Authors:  Joerg Ermann; Laurie H Glimcher
Journal:  Curr Opin Immunol       Date:  2012-09-29       Impact factor: 7.486

Review 6.  Genetics-squared: combining host and pathogen genetics in the analysis of innate immunity and bacterial virulence.

Authors:  Jenny Persson; Russell E Vance
Journal:  Immunogenetics       Date:  2007-09-14       Impact factor: 2.846

7.  Human dopamine beta-hydroxylase (DBH) regulatory polymorphism that influences enzymatic activity, autonomic function, and blood pressure.

Authors:  Yuqing Chen; Gen Wen; Fangwen Rao; Kuixing Zhang; Lei Wang; Juan L Rodriguez-Flores; Amber P Sanchez; Manjula Mahata; Laurent Taupenot; Ping Sun; Sushil K Mahata; Bamidele Tayo; Nicholas J Schork; Michael G Ziegler; Bruce A Hamilton; Daniel T O'Connor
Journal:  J Hypertens       Date:  2010-01       Impact factor: 4.844

8.  Conserved role of unc-79 in ethanol responses in lightweight mutant mice.

Authors:  David J Speca; Daisuke Chihara; Amir M Ashique; M Scott Bowers; Jonathan T Pierce-Shimomura; Jungsoo Lee; Nusrat Rabbee; Terence P Speed; Rodrigo J Gularte; James Chitwood; Juan F Medrano; Mark Liao; James M Sonner; Edmond I Eger; Andrew S Peterson; Steven L McIntire
Journal:  PLoS Genet       Date:  2010-08-12       Impact factor: 5.917

9.  Novel ENU-induced point mutation in scavenger receptor class B, member 1, results in liver specific loss of SCARB1 protein.

Authors:  Ioannis M Stylianou; Karen L Svenson; Sara K VanOrman; Yanina Langle; John S Millar; Beverly Paigen; Daniel J Rader
Journal:  PLoS One       Date:  2009-08-05       Impact factor: 3.240

10.  Discovery of candidate disease genes in ENU-induced mouse mutants by large-scale sequencing, including a splice-site mutation in nucleoredoxin.

Authors:  Melissa K Boles; Bonney M Wilkinson; Laurens G Wilming; Bin Liu; Frank J Probst; Jennifer Harrow; Darren Grafham; Kathryn E Hentges; Lanette P Woodward; Andrea Maxwell; Karen Mitchell; Michael D Risley; Randy Johnson; Karen Hirschi; James R Lupski; Yosuke Funato; Hiroaki Miki; Pablo Marin-Garcia; Lucy Matthews; Alison J Coffey; Anne Parker; Tim J Hubbard; Jane Rogers; Allan Bradley; David J Adams; Monica J Justice
Journal:  PLoS Genet       Date:  2009-12-11       Impact factor: 5.917

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