Literature DB >> 15510166

Computational approaches to unveiling ancient genome duplications.

Yves Van de Peer1.   

Abstract

Recent analyses of complete genome sequences have revealed that many genomes have been duplicated in their evolutionary past. Such events have been associated with important biological transitions, major leaps in evolution and adaptive radiations of species. Here, we consider recently developed computational methods to detect such ancient large-scale gene duplication events. Several new approaches have been used to show that large-scale gene duplications are more common than previously thought.

Mesh:

Year:  2004        PMID: 15510166     DOI: 10.1038/nrg1449

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  61 in total

1.  Matita, a new retroelement from peanut: characterization and evolutionary context in the light of the Arachis A-B genome divergence.

Authors:  Stephan Nielen; Bruna S Vidigal; Soraya C M Leal-Bertioli; Milind Ratnaparkhe; Andrew H Paterson; Olivier Garsmeur; Angélique D'Hont; Patricia M Guimarães; David J Bertioli
Journal:  Mol Genet Genomics       Date:  2011-11-27       Impact factor: 3.291

2.  Modeling gene and genome duplications in eukaryotes.

Authors:  Steven Maere; Stefanie De Bodt; Jeroen Raes; Tineke Casneuf; Marc Van Montagu; Martin Kuiper; Yves Van de Peer
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-30       Impact factor: 11.205

3.  Automated identification of conserved synteny after whole-genome duplication.

Authors:  Julian M Catchen; John S Conery; John H Postlethwait
Journal:  Genome Res       Date:  2009-05-22       Impact factor: 9.043

4.  Evolution of gene function and regulatory control after whole-genome duplication: comparative analyses in vertebrates.

Authors:  Karin S Kassahn; Vinh T Dang; Simon J Wilkins; Andrew C Perkins; Mark A Ragan
Journal:  Genome Res       Date:  2009-05-13       Impact factor: 9.043

Review 5.  The evolution of gene duplications: classifying and distinguishing between models.

Authors:  Hideki Innan; Fyodor Kondrashov
Journal:  Nat Rev Genet       Date:  2010-01-06       Impact factor: 53.242

6.  Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps.

Authors:  Haibao Tang; Xiyin Wang; John E Bowers; Ray Ming; Maqsudul Alam; Andrew H Paterson
Journal:  Genome Res       Date:  2008-10-02       Impact factor: 9.043

7.  Angiosperm genome comparisons reveal early polyploidy in the monocot lineage.

Authors:  Haibao Tang; John E Bowers; Xiyin Wang; Andrew H Paterson
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-04       Impact factor: 11.205

8.  Function relaxation followed by diversifying selection after whole-genome duplication in flowering plants.

Authors:  Hui Guo; Tae-Ho Lee; Xiyin Wang; Andrew H Paterson
Journal:  Plant Physiol       Date:  2013-04-11       Impact factor: 8.340

9.  Probabilistic cross-species inference of orthologous genomic regions created by whole-genome duplication in yeast.

Authors:  Gavin C Conant; Kenneth H Wolfe
Journal:  Genetics       Date:  2008-06-18       Impact factor: 4.562

10.  Phylogenetic detection of numerous gene duplications shared by animals, fungi and plants.

Authors:  Xiaofan Zhou; Zhenguo Lin; Hong Ma
Journal:  Genome Biol       Date:  2010-04-06       Impact factor: 13.583

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