| Literature DB >> 15507143 |
Anne Fogli, Fernande Gauthier-Barichard, Raphael Schiffmann, Vien H Vanderhoof, Vladimir K Bakalov, Lawrence M Nelson, Odile Boespflug-Tanguy.
Abstract
BACKGROUND: Premature Ovarian Failure (POF), defined as the development of hypergonadotropic amenorrhea before the age of 40 years, occurs in about 1% of all women. Other than karyotype abnormalities, very few genes are known to be associated with this ovarian dysfunction. Recently, in seven patients who presented with POF and white matter abnormalities on MRI (ovarioleukodystrophy) eight mutationswere found in EIF2B2, 4 and 5.Entities:
Year: 2004 PMID: 15507143 PMCID: PMC529454 DOI: 10.1186/1472-6874-4-8
Source DB: PubMed Journal: BMC Womens Health ISSN: 1472-6874 Impact factor: 2.809
Sequences of PCR primers used and their PCR conditions.
| Nucleotide change tested (gene) | Primers sequences (5'-3') | PCR conditions |
| C512T ( | F: GCAAAACCGTTCTTAC | |
| 607–612del/insTG ( | F: GGAAATTATGTGCTGGATATG | |
| P243L ( | F: ATGCTCAAGCTCCCTTTCAA | |
| R374C ( | F: ATTCAAGCACCTGGCATGAT | |
| T1393C ( | F: TGTCCTGTAAGTAGGGGACCTT | |
| G338A ( | F: GAGAAGGACTGTGAGTGCTGA |
F: forward primer, R: reverse primer
EIF2B2, 4 and 5 mutations tested with restriction enzymes.
| Mutation tested: nucleotides changes (amino acid changes) | Mutated gene | Restriction enzyme used | PCR product size (base pairs) | Restriction profile (number of restriction fragments: their size in base pairs) | ||
| No mut* | Het mut* | Hom mut* | ||||
| C512T (S171F) | Hpy188III | 251 | 4 fragments: 51, 29, 16 and 155 bp. | 5 fragments: 51, 29, 16, 155 and 171 bp. | 3 fragments: 51, 29 and 171 bp. | |
| 607–612del/insTG (M203fs) | HphI | 313 | 2 fragments: 310 and 3 bp. | 4 fragments: 310, 142, 164 and 3 bp. | 3 fragments: 142, 164 and 3 bp. | |
| C547T (R183stop) | EcoNI | 253 | 2 fragments: 120 and 133 bp. | 4 fragments: 120, 133, 14 and 119 bp. | 3 fragments: 120, 14 and 119 bp. | |
| A638G (E213G) | BsmAI | 313 | 2 fragments: 153 and 160 bp. | 3 fragments: 313, 160 and 153 bp. | 1 fragment: 313 bp | |
| P243L (C728T) | AciI | 612 | 3 fragments: 353, 223 and 36 bp. | 4 fragments: 576, 353, 223 and 36 bp. | 2 fragments: 576 and 36 bp. | |
| R374C (C1120T) | HpyCH4IV | 640 | 2 fragments: 447 and 193 bp. | 3 fragments: 640, 447 and 193 bp. | 1 fragment: 640 bp. | |
| T1393C (C465R) | BsrDI | 694 | 3 fragments: 368, 32 and 294 bp. | 4 fragments: 368, 32, 294 and 326 bp. | 2 fragments: 368 and 326 bp. | |
| T1465C (Y489H) | NlaIII | 707 | 3 fragments: 109, 310 and 288 bp. | 5 fragments: 109, 310, 288, 57 and 231 bp. | 4 fragments: 109, 310, 57 and 231 bp. | |
| G338A (R113H) | Fnu4HI | 800 | 3 fragments: 115, 633 and 52 bp. | 4 fragments: 115, 633, 52 and 748 bp. | 2 fragments: 748 and 52 bp. | |
* No mut: no mutation; Het mut: heterozygous mutation; Hom mut: homozygous mutation.