Literature DB >> 15504411

The folding of spectrin domains I: wild-type domains have the same stability but very different kinetic properties.

Kathryn A Scott1, Sarah Batey, Karen A Hooton, Jane Clarke.   

Abstract

The study of proteins with the same architecture, but different sequence has proven to be a valuable tool in the protein folding field. As a prelude to studies on the folding mechanism of spectrin domains we present the kinetic characterisation of the wild-type forms of the 15th, 16th, and 17th domains of chicken brain alpha-spectrin (referred to as R15, R16 and R17, respectively). We show that the proteins all behave in a two-state manner, with different kinetic properties. The folding rate varies remarkably between different members, with a 5000-fold variation in folding rate and 3000-fold variation in unfolding rate seen for proteins differing only 1 kcal mol(-1) in stability. We show clear evidence for significant complexity in the energy landscape of R16, which shows a change in amplitude outside the stopped-flow timescale and curvature in the unfolding arm of the chevron plot. The accompanying paper describes the characterisation of the folding pathway of this domain.

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Year:  2004        PMID: 15504411     DOI: 10.1016/j.jmb.2004.09.037

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  40 in total

1.  Separating the effects of internal friction and transition state energy to explain the slow, frustrated folding of spectrin domains.

Authors:  Beth G Wensley; Lee Gyan Kwa; Sarah L Shammas; Joseph M Rogers; Stuart Browning; Ziqi Yang; Jane Clarke
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-18       Impact factor: 11.205

2.  Symmetry and frustration in protein energy landscapes: a near degeneracy resolves the Rop dimer-folding mystery.

Authors:  Yaakov Levy; Samuel S Cho; Tongye Shen; José N Onuchic; Peter G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-08       Impact factor: 11.205

3.  Spectrin R16: broad energy barrier or sequential transition states?

Authors:  Kathryn A Scott; Jane Clarke
Journal:  Protein Sci       Date:  2005-06       Impact factor: 6.725

4.  Examining the influence of linkers and tertiary structure in the forced unfolding of multiple-repeat spectrin molecules.

Authors:  Sterling Paramore; Gregory A Voth
Journal:  Biophys J       Date:  2006-08-04       Impact factor: 4.033

5.  Spectrin domains lose cooperativity in forced unfolding.

Authors:  Lucy G Randles; Ross W S Rounsevell; Jane Clarke
Journal:  Biophys J       Date:  2006-11-03       Impact factor: 4.033

6.  Exploring subdomain cooperativity in T4 lysozyme II: uncovering the C-terminal subdomain as a hidden intermediate in the kinetic folding pathway.

Authors:  Jason Cellitti; Rachel Bernstein; Susan Marqusee
Journal:  Protein Sci       Date:  2007-03-30       Impact factor: 6.725

7.  Spectrin folding versus unfolding reactions and RBC membrane stiffness.

Authors:  Qiang Zhu; Robert J Asaro
Journal:  Biophys J       Date:  2007-12-07       Impact factor: 4.033

8.  Distinguishing specific and nonspecific interdomain interactions in multidomain proteins.

Authors:  Lucy G Randles; Sarah Batey; Annette Steward; Jane Clarke
Journal:  Biophys J       Date:  2007-09-21       Impact factor: 4.033

9.  Quantitative criteria for native energetic heterogeneity influences in the prediction of protein folding kinetics.

Authors:  Samuel S Cho; Yaakov Levy; Peter G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-15       Impact factor: 11.205

10.  Comparison of successive transition states for folding reveals alternative early folding pathways of two homologous proteins.

Authors:  Nicoletta Calosci; Celestine N Chi; Barbara Richter; Carlo Camilloni; Ake Engström; Lars Eklund; Carlo Travaglini-Allocatelli; Stefano Gianni; Michele Vendruscolo; Per Jemth
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-25       Impact factor: 11.205

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