Literature DB >> 1550116

A chromosome 14-specific human satellite III DNA subfamily that shows variable presence on different chromosomes 14.

K H Choo1, E Earle, B Vissel, P Kalitsis.   

Abstract

We describe a new subfamily of satellite III DNA (pTRS-63), which, by a combination of in situ hybridization to human metaphase chromosomes and analysis of a panel of somatic cell hybrids, is shown to be specific for human chromosome 14. This DNA has a basic 5-bp repeating unit of diverged GGAAT which is tandemly repeated and organized into either one of two distinct higher-order structures of 5 kb (designated the "L" form) or 4.8 kb (designated the "S" form). In addition, a third (Z) form, representing no detectable levels of this satellite III subfamily, is found. Results from five somatic cell hybrid lines and from a number of informative human individuals suggest that, on any one chromosome 14, only one of the three forms may exist. Subchromosomally, this sequence has been mapped to the p11 region and is distal to the domain occupied by another previously described satellite III subfamily (pTRS-47) found on chromosome 14. The pTRS-63 sequence described adds to the understanding of the structural organization of the short arm of human chromosome 14 and should be useful for the investigation of the molecular etiology of the frequently occurring t(13q14q) and t(14q21q) Robertsonian translocations.

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Year:  1992        PMID: 1550116      PMCID: PMC1682629     

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN: 0002-9297            Impact factor:   11.025


  22 in total

1.  A homologous subfamily of satellite III DNA on human chromosomes 14 and 22.

Authors:  K H Choo; E Earle; C McQuillan
Journal:  Nucleic Acids Res       Date:  1990-10-11       Impact factor: 16.971

Review 2.  A survey of the genomic distribution of alpha satellite DNA on all the human chromosomes, and derivation of a new consensus sequence.

Authors:  K H Choo; B Vissel; A Nagy; E Earle; P Kalitsis
Journal:  Nucleic Acids Res       Date:  1991-03-25       Impact factor: 16.971

Review 3.  Role of acrocentric cen-pter satellite DNA in Robertsonian translocation and chromosomal non-disjunction.

Authors:  K H Choo
Journal:  Mol Biol Med       Date:  1990-10

4.  Chromosomal location by in situ hybridization of the human Sau3A family of DNA repeats.

Authors:  A Agresti; G Rainaldi; A Lobbiani; I Magnani; R Di Lernia; R Meneveri; A G Siccardi; E Ginelli
Journal:  Hum Genet       Date:  1987-04       Impact factor: 4.132

5.  Organization of a repetitive human 1.8 kb KpnI sequence localized in the heterochromatin of chromosome 15.

Authors:  M J Higgins; H S Wang; I Shtromas; T Haliotis; J C Roder; J J Holden; B N White
Journal:  Chromosoma       Date:  1985       Impact factor: 4.316

6.  The 724 family of DNA sequences is interspersed about the pericentromeric regions of human acrocentric chromosomes.

Authors:  D M Kurnit; S Roy; G D Stewart; J Schwedock; R L Neve; G A Bruns; M L Van Keuren; D Patterson
Journal:  Cytogenet Cell Genet       Date:  1986

7.  Human ribosomal RNA genes: orientation of the tandem array and conservation of the 5' end.

Authors:  R G Worton; J Sutherland; J E Sylvester; H F Willard; S Bodrug; I Dubé; C Duff; V Kean; P N Ray; R D Schmickel
Journal:  Science       Date:  1988-01-01       Impact factor: 47.728

8.  Nucleolus organizing genes on chromosome 21: recombination and nondisjunction.

Authors:  R D Schmickel; I L Gonzalez; J M Erickson
Journal:  Ann N Y Acad Sci       Date:  1985       Impact factor: 5.691

9.  Chromosomal localization of human cellular homologues of two viral oncogenes.

Authors:  N Heisterkamp; J Groffen; J R Stephenson; N K Spurr; P N Goodfellow; E Solomon; B Carritt; W F Bodmer
Journal:  Nature       Date:  1982-10-21       Impact factor: 49.962

10.  Human beta satellite DNA: genomic organization and sequence definition of a class of highly repetitive tandem DNA.

Authors:  J S Waye; H F Willard
Journal:  Proc Natl Acad Sci U S A       Date:  1989-08       Impact factor: 11.205

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  20 in total

1.  Identification and characterization of satellite III subfamilies to the acrocentric chromosomes.

Authors:  R Bandyopadhyay; C McQuillan; S L Page; K H Choo; L G Shaffer
Journal:  Chromosome Res       Date:  2001       Impact factor: 5.239

2.  Characterisation of a boundary between satellite III and alphoid sequences on human chromosome 10.

Authors:  M S Jackson; S E Mole; B A Ponder
Journal:  Nucleic Acids Res       Date:  1992-09-25       Impact factor: 16.971

3.  The Evolution of satellite III DNA subfamilies among primates.

Authors:  Malgorzata Jarmuz; Caron D Glotzbach; Kristen A Bailey; Ruma Bandyopadhyay; Lisa G Shaffer
Journal:  Am J Hum Genet       Date:  2007-01-23       Impact factor: 11.025

4.  Mapping of members of the low-copy-number repetitive DNA sequence family chAB4 within the p arms of human acrocentric chromosomes: characterization of Robertsonian translocations.

Authors:  H Kehrer-Sawatzki; G Wöhr; W Schempp; I Eisenbarth; G Barbi; G Assum
Journal:  Chromosome Res       Date:  1998-09       Impact factor: 5.239

5.  Evidence for structural heterogeneity from molecular cytogenetic analysis of dicentric Robertsonian translocations.

Authors:  B A Sullivan; L S Jenkins; E M Karson; J Leana-Cox; S Schwartz
Journal:  Am J Hum Genet       Date:  1996-07       Impact factor: 11.025

6.  Chromosomal localization of human satellites 2 and 3 by a FISH method using oligonucleotides as probes.

Authors:  I Tagarro; A M Fernández-Peralta; J J González-Aguilera
Journal:  Hum Genet       Date:  1994-04       Impact factor: 4.132

7.  The organisation of repetitive sequences in the pericentromeric region of human chromosome 10.

Authors:  M S Jackson; P Slijepcevic; B A Ponder
Journal:  Nucleic Acids Res       Date:  1993-12-25       Impact factor: 16.971

8.  Molecular cytogenetic characterization of 17 rob(13q14q) Robertsonian translocations by FISH, narrowing the region containing the breakpoints.

Authors:  J Y Han; K H Choo; L G Shaffer
Journal:  Am J Hum Genet       Date:  1994-11       Impact factor: 11.025

9.  A functional marker centromere with no detectable alpha-satellite, satellite III, or CENP-B protein: activation of a latent centromere?

Authors:  L E Voullaire; H R Slater; V Petrovic; K H Choo
Journal:  Am J Hum Genet       Date:  1993-06       Impact factor: 11.025

10.  A transcriptomic analysis of human centromeric and pericentric sequences in normal and tumor cells.

Authors:  Angéline Eymery; Béatrice Horard; Michèle El Atifi-Borel; Geneviève Fourel; François Berger; Anne-Laure Vitte; Arnaud Van den Broeck; Elisabeth Brambilla; Alexandra Fournier; Mary Callanan; Sylvie Gazzeri; Saadi Khochbin; Sophie Rousseaux; Eric Gilson; Claire Vourc'h
Journal:  Nucleic Acids Res       Date:  2009-08-31       Impact factor: 16.971

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