Literature DB >> 15496518

RNAi: finding the elusive endonuclease.

Andreas Lingel1, Elisa Izaurralde.   

Abstract

RNA interference involves endonucleolytic cleavage of mRNAs at a site determined by complementary siRNAs. Initial cleavage leads to rapid degradation of the message, resulting in a corresponding reduction in the level of the encoded protein. Despite intensive study, the identity of the endonucleolytic activity (designated slicer) has remained obscure. Now, a combination of structural and biochemical analyses provide compelling evidence that human Argonaute2 (Ago2), a protein already known to be a key player in the RNAi pathway, is in fact the missing endonuclease.

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Year:  2004        PMID: 15496518      PMCID: PMC1370652          DOI: 10.1261/rna.7175704

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  32 in total

1.  RNA interference is mediated by 21- and 22-nucleotide RNAs.

Authors:  S M Elbashir; W Lendeckel; T Tuschl
Journal:  Genes Dev       Date:  2001-01-15       Impact factor: 11.361

2.  Structural biochemistry of a type 2 RNase H: RNA primer recognition and removal during DNA replication.

Authors:  B R Chapados; Q Chai; D J Hosfield; J Qiu; B Shen; J A Tainer
Journal:  J Mol Biol       Date:  2001-03-23       Impact factor: 5.469

3.  The rde-1 gene, RNA interference, and transposon silencing in C. elegans.

Authors:  H Tabara; M Sarkissian; W G Kelly; J Fleenor; A Grishok; L Timmons; A Fire; C C Mello
Journal:  Cell       Date:  1999-10-15       Impact factor: 41.582

4.  Domains in gene silencing and cell differentiation proteins: the novel PAZ domain and redefinition of the Piwi domain.

Authors:  L Cerutti; N Mian; A Bateman
Journal:  Trends Biochem Sci       Date:  2000-10       Impact factor: 13.807

5.  ATP requirements and small interfering RNA structure in the RNA interference pathway.

Authors:  A Nykänen; B Haley; P D Zamore
Journal:  Cell       Date:  2001-11-02       Impact factor: 41.582

6.  Argonaute2, a link between genetic and biochemical analyses of RNAi.

Authors:  S M Hammond; S Boettcher; A A Caudy; R Kobayashi; G J Hannon
Journal:  Science       Date:  2001-08-10       Impact factor: 47.728

7.  Crystal structure of archaeal RNase HII: a homologue of human major RNase H.

Authors:  L Lai; H Yokota; L W Hung; R Kim; S H Kim
Journal:  Structure       Date:  2000-08-15       Impact factor: 5.006

8.  Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans.

Authors:  A Fire; S Xu; M K Montgomery; S A Kostas; S E Driver; C C Mello
Journal:  Nature       Date:  1998-02-19       Impact factor: 49.962

9.  Role for a bidentate ribonuclease in the initiation step of RNA interference.

Authors:  E Bernstein; A A Caudy; S M Hammond; G J Hannon
Journal:  Nature       Date:  2001-01-18       Impact factor: 49.962

10.  Crystal structure of HIV-1 reverse transcriptase in complex with a polypurine tract RNA:DNA.

Authors:  S G Sarafianos; K Das; C Tantillo; A D Clark; J Ding; J M Whitcomb; P L Boyer; S H Hughes; E Arnold
Journal:  EMBO J       Date:  2001-03-15       Impact factor: 11.598

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  12 in total

Review 1.  Evolutionary Genomics of Defense Systems in Archaea and Bacteria.

Authors:  Eugene V Koonin; Kira S Makarova; Yuri I Wolf
Journal:  Annu Rev Microbiol       Date:  2017-06-28       Impact factor: 15.500

2.  Knockdown of 15-bp Deletion-Type v-raf Murine Sarcoma Viral Oncogene Homolog B1 mRNA in Pancreatic Ductal Adenocarcinoma Cells Repressed Cell Growth In Vitro and Tumor Volume In Vivo.

Authors:  Jiaxuan Song; Yoshiaki Kobayashi; Yoshimasa Asano; Atsushi Sato; Hiroaki Taniguchi; Kumiko Ui-Tei
Journal:  Cancers (Basel)       Date:  2022-06-28       Impact factor: 6.575

3.  Rapid decay of unstable Leishmania mRNAs bearing a conserved retroposon signature 3'-UTR motif is initiated by a site-specific endonucleolytic cleavage without prior deadenylation.

Authors:  Michaela Müller; Prasad K Padmanabhan; Annie Rochette; Debdutta Mukherjee; Martin Smith; Carole Dumas; Barbara Papadopoulou
Journal:  Nucleic Acids Res       Date:  2010-05-07       Impact factor: 16.971

4.  New approaches for cancer treatment: antitumor drugs based on gene-targeted nucleic acids.

Authors:  O A Patutina; N L Mironova; V V Vlassov; M A Zenkova
Journal:  Acta Naturae       Date:  2009-07       Impact factor: 1.845

5.  Alternative initiation and splicing in dicer gene expression in human breast cells.

Authors:  Charletha V Irvin-Wilson; Gautam Chaudhuri
Journal:  Breast Cancer Res       Date:  2005-05-16       Impact factor: 6.466

Review 6.  Hunting the needle in the haystack: a guide to obtain biologically meaningful microRNA targets.

Authors:  Michael Karbiener; Christina Glantschnig; Marcel Scheideler
Journal:  Int J Mol Sci       Date:  2014-11-06       Impact factor: 5.923

7.  Identification of Apurinic/apyrimidinic endonuclease 1 (APE1) as the endoribonuclease that cleaves c-myc mRNA.

Authors:  Tavish Barnes; Wan-Cheol Kim; Anil K Mantha; Sang-Eun Kim; Tadahide Izumi; Sankar Mitra; Chow H Lee
Journal:  Nucleic Acids Res       Date:  2009-04-28       Impact factor: 16.971

8.  Adenovirus VA RNA-derived miRNAs target cellular genes involved in cell growth, gene expression and DNA repair.

Authors:  Oscar Aparicio; Elena Carnero; Xabier Abad; Nerea Razquin; Elizabeth Guruceaga; Victor Segura; Puri Fortes
Journal:  Nucleic Acids Res       Date:  2009-11-19       Impact factor: 16.971

9.  Human liver stem cell-derived microvesicles accelerate hepatic regeneration in hepatectomized rats.

Authors:  M B Herrera; V Fonsato; S Gatti; M C Deregibus; A Sordi; D Cantarella; R Calogero; B Bussolati; C Tetta; G Camussi
Journal:  J Cell Mol Med       Date:  2009-07-24       Impact factor: 5.310

10.  Computational models with thermodynamic and composition features improve siRNA design.

Authors:  Svetlana A Shabalina; Alexey N Spiridonov; Aleksey Y Ogurtsov
Journal:  BMC Bioinformatics       Date:  2006-02-12       Impact factor: 3.169

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