Literature DB >> 15494307

Global position and recruitment of HATs and HDACs in the yeast genome.

François Robert1, Dmitry K Pokholok, Nancy M Hannett, Nicola J Rinaldi, Mark Chandy, Alex Rolfe, Jerry L Workman, David K Gifford, Richard A Young.   

Abstract

Chromatin regulators play fundamental roles in the regulation of gene expression and chromosome maintenance, but the regions of the genome where most of these regulators function has not been established. We explored the genome-wide occupancy of four different chromatin regulators encoded in Saccharomyces cerevisiae. The results reveal that the histone acetyltransferases Gcn5 and Esa1 are both generally recruited to the promoters of active protein-coding genes. In contrast, the histone deacetylases Hst1 and Rpd3 are recruited to specific sets of genes associated with distinct cellular functions. Our results provide new insights into the association of histone acetyltransferases and histone deacetylases with the yeast genome, and together with previous studies, suggest how these chromatin regulators are recruited to specific regions of the genome.

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Year:  2004        PMID: 15494307      PMCID: PMC3004369          DOI: 10.1016/j.molcel.2004.09.021

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  86 in total

1.  Genome-wide location and function of DNA binding proteins.

Authors:  B Ren; F Robert; J J Wyrick; O Aparicio; E G Jennings; I Simon; J Zeitlinger; J Schreiber; N Hannett; E Kanin; T L Volkert; C J Wilson; S P Bell; R A Young
Journal:  Science       Date:  2000-12-22       Impact factor: 47.728

2.  Redundant roles for the TFIID and SAGA complexes in global transcription.

Authors:  T I Lee; H C Causton; F C Holstege; W C Shen; N Hannett; E G Jennings; F Winston; M R Green; R A Young
Journal:  Nature       Date:  2000-06-08       Impact factor: 49.962

3.  Distribution of acetylated histones resulting from Gal4-VP16 recruitment of SAGA and NuA4 complexes.

Authors:  M Vignali; D J Steger; K E Neely; J L Workman
Journal:  EMBO J       Date:  2000-06-01       Impact factor: 11.598

Review 4.  25 years after the nucleosome model: chromatin modifications.

Authors:  J Wu; M Grunstein
Journal:  Trends Biochem Sci       Date:  2000-12       Impact factor: 13.807

5.  Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF.

Authors:  V R Iyer; C E Horak; C S Scafe; D Botstein; M Snyder; P O Brown
Journal:  Nature       Date:  2001-01-25       Impact factor: 49.962

6.  Phosphorylation of linker histone H1 regulates gene expression in vivo by creating a charge patch.

Authors:  Y Dou; M A Gorovsky
Journal:  Mol Cell       Date:  2000-08       Impact factor: 17.970

7.  Sds3 (suppressor of defective silencing 3) is an integral component of the yeast Sin3[middle dot]Rpd3 histone deacetylase complex and is required for histone deacetylase activity.

Authors:  T Lechner; M J Carrozza; Y Yu; P A Grant; A Eberharter; D Vannier; G Brosch; D J Stillman; D Shore; J L Workman
Journal:  J Biol Chem       Date:  2000-12-29       Impact factor: 5.157

8.  Genomic expression programs in the response of yeast cells to environmental changes.

Authors:  A P Gasch; P T Spellman; C M Kao; O Carmel-Harel; M B Eisen; G Storz; D Botstein; P O Brown
Journal:  Mol Biol Cell       Date:  2000-12       Impact factor: 4.138

9.  Overlapping roles for the histone acetyltransferase activities of SAGA and elongator in vivo.

Authors:  B O Wittschieben; J Fellows; W Du; D J Stillman; J Q Svejstrup
Journal:  EMBO J       Date:  2000-06-15       Impact factor: 11.598

10.  Cyclophilin A and Ess1 interact with and regulate silencing by the Sin3-Rpd3 histone deacetylase.

Authors:  M Arévalo-Rodríguez; M E Cardenas; X Wu; S D Hanes; J Heitman
Journal:  EMBO J       Date:  2000-07-17       Impact factor: 11.598

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  138 in total

1.  Gcn4p-mediated transcriptional repression of ribosomal protein genes under amino-acid starvation.

Authors:  Yoo Jin Joo; Jin-Ha Kim; Un-Beom Kang; Myeong-Hee Yu; Joon Kim
Journal:  EMBO J       Date:  2010-12-24       Impact factor: 11.598

2.  Negative and positive regulation of gene expression by mouse histone deacetylase 1.

Authors:  Gordin Zupkovitz; Julia Tischler; Markus Posch; Iwona Sadzak; Katrin Ramsauer; Gerda Egger; Reinhard Grausenburger; Norbert Schweifer; Susanna Chiocca; Thomas Decker; Christian Seiser
Journal:  Mol Cell Biol       Date:  2006-08-28       Impact factor: 4.272

3.  Preferential occupancy of histone variant H2AZ at inactive promoters influences local histone modifications and chromatin remodeling.

Authors:  Bing Li; Samantha G Pattenden; Daeyoup Lee; José Gutiérrez; Jie Chen; Chris Seidel; Jennifer Gerton; Jerry L Workman
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-12       Impact factor: 11.205

4.  A genomic code for nucleosome positioning.

Authors:  Eran Segal; Yvonne Fondufe-Mittendorf; Lingyi Chen; AnnChristine Thåström; Yair Field; Irene K Moore; Ji-Ping Z Wang; Jonathan Widom
Journal:  Nature       Date:  2006-07-19       Impact factor: 49.962

5.  Mutations in the extra sex combs and Enhancer of Polycomb genes increase homologous recombination in somatic cells of Drosophila melanogaster.

Authors:  Angela M Holmes; Kelly A Weedmark; Gregory B Gloor
Journal:  Genetics       Date:  2006-02-01       Impact factor: 4.562

Review 6.  Applying whole-genome studies of epigenetic regulation to study human disease.

Authors:  J D Lieb; S Beck; M L Bulyk; P Farnham; N Hattori; S Henikoff; X S Liu; K Okumura; K Shiota; T Ushijima; J M Greally
Journal:  Cytogenet Genome Res       Date:  2006       Impact factor: 1.636

Review 7.  Multi-tasking on chromatin with the SAGA coactivator complexes.

Authors:  Jeremy A Daniel; Patrick A Grant
Journal:  Mutat Res       Date:  2007-01-21       Impact factor: 2.433

8.  Selective requirement for SAGA in Hog1-mediated gene expression depending on the severity of the external osmostress conditions.

Authors:  Meritxell Zapater; Marc Sohrmann; Matthias Peter; Francesc Posas; Eulàlia de Nadal
Journal:  Mol Cell Biol       Date:  2007-04-02       Impact factor: 4.272

9.  Genomewide analysis of nucleosome density histone acetylation and HDAC function in fission yeast.

Authors:  Marianna Wirén; Rebecca A Silverstein; Indranil Sinha; Julian Walfridsson; Hang-Mao Lee; Patricia Laurenson; Lorraine Pillus; Daniel Robyr; Michael Grunstein; Karl Ekwall
Journal:  EMBO J       Date:  2005-08-04       Impact factor: 11.598

10.  A role for mammalian Sin3 in permanent gene silencing.

Authors:  Chris van Oevelen; Jinhua Wang; Patrik Asp; Qin Yan; William G Kaelin; Yuval Kluger; Brian David Dynlacht
Journal:  Mol Cell       Date:  2008-11-07       Impact factor: 17.970

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