Literature DB >> 15491996

A family 8 glycoside hydrolase from Bacillus halodurans C-125 (BH2105) is a reducing end xylose-releasing exo-oligoxylanase.

Yuji Honda1, Motomitsu Kitaoka.   

Abstract

The gene encoding family 8 glycoside hydrolases from Bacillus halodurans C-125 (BH2105), an alkalophilic bacterium with a known genomic sequence, was expressed in Escherichia coli. The protein was expressed with the intact N-terminal sequence, suggesting that it did not possess a signal peptide and that it was an intracellular enzyme. The recombinant enzyme showed no hydrolytic activity on xylan, whereas it had been annotated as xylanase Y. It hydrolyzed xylooligosaccharide whose degree of polymerization is greater than or equal to 3 in an exo-splitting manner with anomeric inversion, releasing the xylose unit at the reducing end. Judging from its substrate specificity and reaction mechanism, we named the enzyme reducing end xylose-releasing exo-oligoxylanase (Rex). Rex was found to utilize only the beta-anomer of the substrate to form beta-xylose and alpha-xylooligosaccharide. The optimum pH of the enzymatic reaction (6.2-7.3) was found in the neutral range, a range beneficial for intracellular enzymes. The genomic sequence suggests that B. halodurans secretes two endoxylanases and possesses two alpha-arabinofuranosidases, one alpha-glucuronidase, and three beta-xylosidases intracellularly in addition to Rex. The extracellular enzymes supposedly hydrolyze xylan into arabino/glucurono-xylooligosaccharides that are then transported into the cells. Rex may play a role as a key enzyme in intracellular xylan metabolism in B. halodurans by cleaving xylooligosaccharides that were produced by the action of other intracellular enzymes from the arabino/glucurono-xylooligosaccharides.

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Year:  2004        PMID: 15491996     DOI: 10.1074/jbc.M409832200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  23 in total

1.  Cloning, sequence analysis, and expression of a gene encoding an endoxylanase from Bacillus halodurans S7.

Authors:  Gashaw Mamo; Osvaldo Delgado; Alejandra Martinez; Bo Mattiasson; Rajni Hatti-Kaul
Journal:  Mol Biotechnol       Date:  2006-06       Impact factor: 2.695

2.  Crystallization and preliminary X-ray analysis of reducing-end xylose-releasing exo-oligoxylanase from Bacillus halodurans C-125.

Authors:  Yuji Honda; Shinya Fushinobu; Masafumi Hidaka; Takayoshi Wakagi; Hirofumi Shoun; Motomitsu Kitaoka
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-02-12

3.  Crystal structure of glycoside hydrolase family 55 {beta}-1,3-glucanase from the basidiomycete Phanerochaete chrysosporium.

Authors:  Takuya Ishida; Shinya Fushinobu; Rie Kawai; Motomitsu Kitaoka; Kiyohiko Igarashi; Masahiro Samejima
Journal:  J Biol Chem       Date:  2009-02-04       Impact factor: 5.157

4.  Characterization of a glucose-, xylose-, sucrose-, and D-galactose-stimulated β-glucosidase from the alkalophilic bacterium Bacillus halodurans C-125.

Authors:  Hu Xu; Ai-Sheng Xiong; Wei Zhao; Yong-Sheng Tian; Ri-He Peng; Jian-Min Chen; Quan-Hong Yao
Journal:  Curr Microbiol       Date:  2010-11-03       Impact factor: 2.188

5.  Molecular mechanisms associated with xylan degradation by Xanthomonas plant pathogens.

Authors:  Camila Ramos Santos; Zaira Bruna Hoffmam; Vanesa Peixoto de Matos Martins; Leticia Maria Zanphorlin; Leandro Henrique de Paula Assis; Rodrigo Vargas Honorato; Paulo Sérgio Lopes de Oliveira; Roberto Ruller; Mario Tyago Murakami
Journal:  J Biol Chem       Date:  2014-09-29       Impact factor: 5.157

6.  A New Group of Modular Xylanases in Glycoside Hydrolase Family 8 from Marine Bacteria.

Authors:  Xiu-Lan Chen; Fang Zhao; Yong-Sheng Yue; Xi-Ying Zhang; Yu-Zhong Zhang; Ping-Yi Li
Journal:  Appl Environ Microbiol       Date:  2018-11-15       Impact factor: 4.792

7.  Structural dissection of the reaction mechanism of cellobiose phosphorylase.

Authors:  Masafumi Hidaka; Motomitsu Kitaoka; Kiyoshi Hayashi; Takayoshi Wakagi; Hirofumi Shoun; Shinya Fushinobu
Journal:  Biochem J       Date:  2006-08-15       Impact factor: 3.857

8.  Cloning and characterization of dihydrofolate reductase from a facultative alkaliphilic and halotolerant bacillus strain.

Authors:  Lars Redecke; Maria A Brehm; Reinhard Bredehorst
Journal:  Extremophiles       Date:  2006-10-05       Impact factor: 2.395

9.  Two new xylanases with different substrate specificities from the human gut bacterium Bacteroides intestinalis DSM 17393.

Authors:  Pei-Ying Hong; Michael Iakiviak; Dylan Dodd; Meiling Zhang; Roderick I Mackie; Isaac Cann
Journal:  Appl Environ Microbiol       Date:  2014-01-24       Impact factor: 4.792

10.  Mechanistic strategies for catalysis adopted by evolutionary distinct family 43 arabinanases.

Authors:  Camila R Santos; Carla C Polo; Maria C M F Costa; Andrey F Z Nascimento; Andreia N Meza; Junio Cota; Zaira B Hoffmam; Rodrigo V Honorato; Paulo S L Oliveira; Gustavo H Goldman; Harry J Gilbert; Rolf A Prade; Roberto Ruller; Fabio M Squina; Dominic W S Wong; Mário T Murakami
Journal:  J Biol Chem       Date:  2014-01-27       Impact factor: 5.157

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