Literature DB >> 15491622

Crystals of native and modified bovine rhodopsins and their heavy atom derivatives.

Patricia C Edwards1, Jade Li, Manfred Burghammer, J Hugh McDowell, Claudio Villa, Paul A Hargrave, Gebhard F X Schertler.   

Abstract

Rhodopsin, the pigment protein responsible for dim-light vision, is a G protein-coupled receptor that converts light absorption into the activation of a G protein, transducin, to initiate the visual response. We have crystallised detergent-solubilised bovine rhodopsin in the native form and after chemical modifications as needles 10-40 microm in cross-section. The crystals belong to the trigonal space group P3(1), with two molecules of rhodopsin per asymmetric unit, related by a non-crystallographic 2-fold axis parallel with the crystallographic screw axis along c (needle axis). The unit cell dimensions are a=103.8 A, c=76.6 A for native rhodopsin, but vary over a wide range after heavy atom derivatisation, with a between 101.5 A and 113.9 A, and c between 76.6 A and 79.2 A. Rhodopsin molecules are packed with the bundle of transmembrane helices tilted from the c-axis by about 100 degrees . The two molecules in the asymmetric unit form contacts along the entire length of their transmembrane helices 5 in an antiparallel orientation, and they are stacked along the needle axis according to the 3-fold screw symmetry. Hence hydrophobic contacts are prominent at protein interfaces both along and normal to the needle axis. The best crystals of native rhodopsin in this crystal form diffracted X-rays from a microfocused synchrotron source to 2.55 A maximum resolution. We describe steps taken to extend the diffraction limit from about 10 A to 2.6 A.

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Year:  2004        PMID: 15491622     DOI: 10.1016/j.jmb.2004.08.089

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  14 in total

1.  Binding of more than one retinoid to visual opsins.

Authors:  Clint L Makino; Charles K Riley; James Looney; Rosalie K Crouch; Tetsuji Okada
Journal:  Biophys J       Date:  2010-10-06       Impact factor: 4.033

2.  Crystallization of a mammalian membrane protein overexpressed in Saccharomyces cerevisiae.

Authors:  Marie Jidenko; Rikke C Nielsen; Thomas Lykke-Møller Sørensen; Jesper V Møller; Marc le Maire; Poul Nissen; Christine Jaxel
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-08       Impact factor: 11.205

Review 3.  G protein coupled receptor structure and activation.

Authors:  Brian K Kobilka
Journal:  Biochim Biophys Acta       Date:  2006-11-15

4.  How a small change in retinal leads to G-protein activation: initial events suggested by molecular dynamics calculations.

Authors:  Paul S Crozier; Mark J Stevens; Thomas B Woolf
Journal:  Proteins       Date:  2007-02-15

5.  Functional map of arrestin-1 at single amino acid resolution.

Authors:  Martin K Ostermaier; Christian Peterhans; Rolf Jaussi; Xavier Deupi; Jörg Standfuss
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-21       Impact factor: 11.205

6.  Crystal packing analysis of Rhodopsin crystals.

Authors:  David T Lodowski; David Salom; Isolde Le Trong; David C Teller; Juan A Ballesteros; Krzysztof Palczewski; Ronald E Stenkamp
Journal:  J Struct Biol       Date:  2007-02-09       Impact factor: 2.867

7.  Dimerization of visual pigments in vivo.

Authors:  Tao Zhang; Li-Hui Cao; Sandeep Kumar; Nduka O Enemchukwu; Ning Zhang; Alyssia Lambert; Xuchen Zhao; Alex Jones; Shixian Wang; Emily M Dennis; Amrita Fnu; Sam Ham; Jon Rainier; King-Wai Yau; Yingbin Fu
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-26       Impact factor: 11.205

8.  A role for direct interactions in the modulation of rhodopsin by omega-3 polyunsaturated lipids.

Authors:  Alan Grossfield; Scott E Feller; Michael C Pitman
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-17       Impact factor: 11.205

9.  Crystal structure of a thermally stable rhodopsin mutant.

Authors:  Jörg Standfuss; Guifu Xie; Patricia C Edwards; Manfred Burghammer; Daniel D Oprian; Gebhard F X Schertler
Journal:  J Mol Biol       Date:  2007-03-12       Impact factor: 5.469

10.  Alternative models for two crystal structures of bovine rhodopsin.

Authors:  Ronald E Stenkamp
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2008-07-17
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