Literature DB >> 15491608

Optimisation of the surface electrostatics as a strategy for cold adaptation of uracil-DNA N-glycosylase (UNG) from Atlantic cod (Gadus morhua).

Elin Moe1, Ingar Leiros, Ellen Kristin Riise, Magne Olufsen, Olav Lanes, Arneo Smalås, Nils Peder Willassen.   

Abstract

Cold-adapted enzymes are characterised by an increased catalytic efficiency and reduced temperature stability compared to their mesophilic counterparts. Lately, it has been suggested that an optimisation of the electrostatic surface potential is a strategy for cold adaptation for some enzymes. A visualisation of the electrostatic surface potential of cold-adapted uracil-DNA N-glycosylase (cUNG) from Atlantic cod indicates a more positively charged surface near the active site compared to human UNG (hUNG). In order to investigate the importance of the altered surface potential for the cold-adapted features of cod UNG, six mutants have been characterised and compared to cUNG and hUNG. The cUNG quadruple mutant (V171E, K185V, H250Q and H275Y) and four corresponding single mutants all comprise substitutions of residues present in the human enzyme. A human UNG mutant, E171V, comprises the equivalent residue found in cod UNG. In addition, crystal structures of the single mutants V171E and E171V have been determined. Results from the study show that a more negative electrostatic surface potential reduces the activity and increases the stability of cod UNG, and suggest an optimisation of the surface potential as a strategy for cold-adaptation of this enzyme. Val171 in cod UNG is especially important in this respect.

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Year:  2004        PMID: 15491608     DOI: 10.1016/j.jmb.2004.09.004

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  9 in total

1.  Overexpression, purification, crystallization and preliminary X-ray analysis of uracil N-glycosylase from Mycobacterium tuberculosis in complex with a proteinaceous inhibitor.

Authors:  Prem Singh; Ramappa K Talawar; P D V Krishna; Umesh Varshney; M Vijayan
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-11-30

2.  Cold-active enzymes studied by comparative molecular dynamics simulation.

Authors:  Vojtech Spiwok; Petra Lipovová; Tereza Skálová; Jarmila Dusková; Jan Dohnálek; Jindrich Hasek; Nicholas J Russell; Blanka Králová
Journal:  J Mol Model       Date:  2007-01-18       Impact factor: 1.810

3.  Structure of uracil-DNA N-glycosylase (UNG) from Vibrio cholerae: mapping temperature adaptation through structural and mutational analysis.

Authors:  Inger Lin Uttakleiv Raeder; Elin Moe; Nils Peder Willassen; Arne O Smalås; Ingar Leiros
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-01-26

Review 4.  Uracil-DNA glycosylase: Structural, thermodynamic and kinetic aspects of lesion search and recognition.

Authors:  Dmitry O Zharkov; Grigory V Mechetin; Georgy A Nevinsky
Journal:  Mutat Res       Date:  2009-11-10       Impact factor: 2.433

5.  Cold adaptation of zinc metalloproteases in the thermolysin family from deep sea and arctic sea ice bacteria revealed by catalytic and structural properties and molecular dynamics: new insights into relationship between conformational flexibility and hydrogen bonding.

Authors:  Bin-Bin Xie; Fei Bian; Xiu-Lan Chen; Hai-Lun He; Jun Guo; Xiang Gao; Yin-Xin Zeng; Bo Chen; Bai-Cheng Zhou; Yu-Zhong Zhang
Journal:  J Biol Chem       Date:  2009-01-30       Impact factor: 5.157

6.  Electrostatic interactions play an essential role in DNA repair and cold-adaptation of uracil DNA glycosylase.

Authors:  Magne Olufsen; Arne O Smalås; Bjørn O Brandsdal
Journal:  J Mol Model       Date:  2008-01-15       Impact factor: 1.810

7.  A structurally conserved motif in γ-herpesvirus uracil-DNA glycosylases elicits duplex nucleotide-flipping.

Authors:  Christopher Earl; Claire Bagnéris; Kara Zeman; Ambrose Cole; Tracey Barrett; Renos Savva
Journal:  Nucleic Acids Res       Date:  2018-05-04       Impact factor: 16.971

Review 8.  Psychrophilic enzymes: from folding to function and biotechnology.

Authors:  Georges Feller
Journal:  Scientifica (Cairo)       Date:  2013-01-17

9.  Structural and biophysical analysis of interactions between cod and human uracil-DNA N-glycosylase (UNG) and UNG inhibitor (Ugi).

Authors:  Netsanet Gizaw Assefa; Laila Niiranen; Kenneth A Johnson; Hanna-Kirsti Schrøder Leiros; Arne Oskar Smalås; Nils Peder Willassen; Elin Moe
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-07-25
  9 in total

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