Literature DB >> 15480479

High-throughput protein crystallography and drug discovery.

Ian Tickle1, Andrew Sharff, Mladen Vinkovic, Jeff Yon, Harren Jhoti.   

Abstract

Single crystal X-ray diffraction is the technique of choice for studying the interactions of small organic molecules with proteins by determining their three-dimensional structures; however the requirement for highly purified protein and lack of process automation have traditionally limited its use in this field. Despite these shortcomings, the use of crystal structures of therapeutically relevant drug targets in pharmaceutical research has increased significantly over the last decade. The application of structure-based drug design has resulted in several marketed drugs and is now an established discipline in most pharmaceutical companies. Furthermore, the recently published full genome sequences of Homo sapiens and a number of micro-organisms have provided a plethora of new potential drug targets that could be utilised in structure-based drug design programs. In order to take maximum advantage of this explosion of information, techniques have been developed to automate and speed up the various procedures required to obtain protein crystals of suitable quality, to collect and process the raw X-ray diffraction data into usable structural information, and to use three-dimensional protein structure as a basis for drug discovery and lead optimisation. This tutorial review covers the various technologies involved in the process pipeline for high-throughput protein crystallography as it is currently being applied to drug discovery. It is aimed at synthetic and computational chemists, as well as structural biologists, in both academia and industry, who are interested in structure-based drug design.

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Year:  2004        PMID: 15480479     DOI: 10.1039/b314510g

Source DB:  PubMed          Journal:  Chem Soc Rev        ISSN: 0306-0012            Impact factor:   54.564


  14 in total

1.  The flow synthesis of heterocycles for natural product and medicinal chemistry applications.

Authors:  Marcus Baumann; Ian R Baxendale; Steven V Ley
Journal:  Mol Divers       Date:  2010-10-20       Impact factor: 2.943

2.  A simple and effective calibration method to determine the accuracy of liquid-handling nano-dispenser devices.

Authors:  Sonia Rodríguez-Puente; Judith Linacero-Blanco; Alicia Guasch
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-02-23

3.  Characterizing protein crystal contacts and their role in crystallization: rubredoxin as a case study.

Authors:  Diana Fusco; Jeffrey J Headd; Alfonso De Simone; Jun Wang; Patrick Charbonneau
Journal:  Soft Matter       Date:  2014-01-14       Impact factor: 3.679

4.  Automated ligand fitting by core-fragment fitting and extension into density.

Authors:  Thomas C Terwilliger; Herbert Klei; Paul D Adams; Nigel W Moriarty; Judith D Cohn
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-07-18

Review 5.  Therapeutic strategies underpinning the development of novel techniques for the treatment of HIV infection.

Authors:  Jian J Tan; Xiao J Cong; Li M Hu; Cun X Wang; Lee Jia; Xing-Jie Liang
Journal:  Drug Discov Today       Date:  2010-01-22       Impact factor: 7.851

6.  UV LED lighting for automated crystal centring.

Authors:  Leonard M G Chavas; Yusuke Yamada; Masahiko Hiraki; Noriyuki Igarashi; Naohiro Matsugaki; Soichi Wakatsuki
Journal:  J Synchrotron Radiat       Date:  2010-11-05       Impact factor: 2.616

7.  Handling ligands with Coot.

Authors:  Judit É Debreczeni; Paul Emsley
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-03-16

8.  Ligand identification using electron-density map correlations.

Authors:  Thomas C Terwilliger; Paul D Adams; Nigel W Moriarty; Judith D Cohn
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-12-13

9.  Interaction between plate make and protein in protein crystallisation screening.

Authors:  Gordon J King; Kai-En Chen; Gautier Robin; Jade K Forwood; Begoña Heras; Anil S Thakur; Bostjan Kobe; Simon P Blomberg; Jennifer L Martin
Journal:  PLoS One       Date:  2009-11-16       Impact factor: 3.240

10.  Protein solubility and folding enhancement by interaction with RNA.

Authors:  Seong Il Choi; Kyoung Sim Han; Chul Woo Kim; Ki-Sun Ryu; Byung Hee Kim; Kyun-Hwan Kim; Seo-Il Kim; Tae Hyun Kang; Hang-Cheol Shin; Keo-Heun Lim; Hyo Kyung Kim; Jeong-Min Hyun; Baik L Seong
Journal:  PLoS One       Date:  2008-07-16       Impact factor: 3.240

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