Literature DB >> 15479716

Circular genome visualization and exploration using CGView.

Paul Stothard1, David S Wishart.   

Abstract

UNLABELLED: CGView (Circular Genome Viewer) is a Java application and library for generating high-quality, zoomable maps of circular genomes. It converts XML or tab-delimited input into a graphical map (PNG, JPG or Scalable Vector Graphics format), complete with sequence features, labels, legends and footnotes. In addition to the default full view map, the program can generate a series of hyperlinked maps showing expanded views. The linked maps can be explored using any Web browser, allowing rapid genome browsing and facilitating data sharing. AVAILABILITY: CGView (the standalone application, library or applet), sample input, sample maps and documentation can be obtained from http://wishart.biology.ualberta.ca/cgview/ CONTACT: david.wishart@ualberta.ca.

Mesh：

Year:  2004        PMID： 15479716     DOI： 10.1093/bioinformatics/bti054

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  361 in total

1.  The complete mitochondrial genome of Pseudochauhanea macrorchis (Monogenea: Chauhaneidae) revealed a highly repetitive region and a gene rearrangement hot spot in Polyopisthocotylea.

Authors:  Juan Zhang; Xiangyun Wu; Mingquan Xie; Anxing Li
Journal:  Mol Biol Rep       Date:  2012-04-29       Impact factor: 2.316

2.  RNAspace.org: An integrated environment for the prediction, annotation, and analysis of ncRNA.

Authors:  Marie-Josée Cros; Antoine de Monte; Jérôme Mariette; Philippe Bardou; Benjamin Grenier-Boley; Daniel Gautheret; Hélène Touzet; Christine Gaspin
Journal:  RNA       Date:  2011-09-23       Impact factor: 4.942

3.  Resolution of a meningococcal disease outbreak from whole-genome sequence data with rapid Web-based analysis methods.

Authors:  Keith A Jolley; Dorothea M C Hill; Holly B Bratcher; Odile B Harrison; Ian M Feavers; Julian Parkhill; Martin C J Maiden
Journal:  J Clin Microbiol       Date:  2012-07-11       Impact factor: 5.948

4.  Identification and genomic analysis of a novel member of Microviridae, IME-16, through high-throughput sequencing.

Authors:  Peng Shu; Azeem Mehmood Butt; Zhiqiang Mi; Wei Wang; Xiaoping An; Guangqian Pei; Zhiyi Zhang; Yong Huang; Xianglilan Zhang; Taoxing Shi; Yigang Tong
Journal:  Virol Sin       Date:  2015-08       Impact factor: 4.327

5.  Solution Structure of MTH0776 from Methanobacterium thermoautotrophicum.

Authors:  Godwin Amegbey; Paul Stothard; Ekaterina Kuznetsova; Adelinda Yee; Cheryl H Arrowsmith; David S Wishart
Journal:  J Biomol NMR       Date:  2005-09       Impact factor: 2.835

6.  The alliance for cellular signaling plasmid collection: a flexible resource for protein localization studies and signaling pathway analysis.

Authors:  Joelle R Zavzavadjian; Sam Couture; Wei Sun Park; James Whalen; Stephen Lyon; Genie Lee; Eileen Fung; Qingli Mi; Jamie Liu; Estelle Wall; Leah Santat; Kavitha Dhandapani; Christine Kivork; Adrienne Driver; Xiaocui Zhu; Mi Sook Chang; Baljinder Randhawa; Elizabeth Gehrig; Heather Bryan; Mary Verghese; Andreia Maer; Brian Saunders; Yuhong Ning; Shankar Subramaniam; Tobias Meyer; Melvin I Simon; Nancy O'Rourke; Grischa Chandy; Iain D C Fraser
Journal:  Mol Cell Proteomics       Date:  2006-12-27       Impact factor: 5.911

7.  The complete genome sequence of Roseobacter denitrificans reveals a mixotrophic rather than photosynthetic metabolism.

Authors:  Wesley D Swingley; Sumedha Sadekar; Stephen D Mastrian; Heather J Matthies; Jicheng Hao; Hector Ramos; Chaitanya R Acharya; Amber L Conrad; Heather L Taylor; Liza C Dejesa; Maulik K Shah; Maeve E O'huallachain; Michael T Lince; Robert E Blankenship; J Thomas Beatty; Jeffrey W Touchman
Journal:  J Bacteriol       Date:  2006-11-10       Impact factor: 3.490

8.  Disruption of tetR type regulator adeN by mobile genetic element confers elevated virulence in Acinetobacter baumannii.

Authors:  Rajagopalan Saranathan; Sudhakar Pagal; Ajit R Sawant; Archana Tomar; M Madhangi; Suresh Sah; Annapurna Satti; K P Arunkumar; K Prashanth
Journal:  Virulence       Date:  2017-04-24       Impact factor: 5.882

9.  Genome and Plasmid Analysis of blaIMP-4-Carrying Citrobacter freundii B38.

Authors:  Jianhui Xiong; Maxime Déraspe; Naeem Iqbal; Jennifer Ma; Frances B Jamieson; Jessica Wasserscheid; Ken Dewar; Peter M Hawkey; Paul H Roy
Journal:  Antimicrob Agents Chemother       Date:  2016-10-21       Impact factor: 5.191

10.  Mutational activation of niche-specific genes provides insight into regulatory networks and bacterial function in a complex environment.

Authors:  Stephen R Giddens; Robert W Jackson; Christina D Moon; Michael A Jacobs; Xue-Xian Zhang; Stefanie M Gehrig; Paul B Rainey
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-07       Impact factor: 11.205
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