Literature DB >> 15472076

A glycine-dependent riboswitch that uses cooperative binding to control gene expression.

Maumita Mandal1, Mark Lee, Jeffrey E Barrick, Zasha Weinberg, Gail Mitchell Emilsson, Walter L Ruzzo, Ronald R Breaker.   

Abstract

We identified a previously unknown riboswitch class in bacteria that is selectively triggered by glycine. A representative of these glycine-sensing RNAs from Bacillus subtilis operates as a rare genetic on switch for the gcvT operon, which codes for proteins that form the glycine cleavage system. Most glycine riboswitches integrate two ligand-binding domains that function cooperatively to more closely approximate a two-state genetic switch. This advanced form of riboswitch may have evolved to ensure that excess glycine is efficiently used to provide carbon flux through the citric acid cycle and maintain adequate amounts of the amino acid for protein synthesis. Thus, riboswitches perform key regulatory roles and exhibit complex performance characteristics that previously had been observed only with protein factors.

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15472076     DOI: 10.1126/science.1100829

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  222 in total

1.  An energetically beneficial leader-linker interaction abolishes ligand-binding cooperativity in glycine riboswitches.

Authors:  Eileen M Sherman; Jackie Esquiaqui; Galal Elsayed; Jing-Dong Ye
Journal:  RNA       Date:  2012-01-25       Impact factor: 4.942

2.  RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction.

Authors:  José Almeida Cruz; Marc-Frédérick Blanchet; Michal Boniecki; Janusz M Bujnicki; Shi-Jie Chen; Song Cao; Rhiju Das; Feng Ding; Nikolay V Dokholyan; Samuel Coulbourn Flores; Lili Huang; Christopher A Lavender; Véronique Lisi; François Major; Katarzyna Mikolajczak; Dinshaw J Patel; Anna Philips; Tomasz Puton; John Santalucia; Fredrick Sijenyi; Thomas Hermann; Kristian Rother; Magdalena Rother; Alexander Serganov; Marcin Skorupski; Tomasz Soltysinski; Parin Sripakdeevong; Irina Tuszynska; Kevin M Weeks; Christina Waldsich; Michael Wildauer; Neocles B Leontis; Eric Westhof
Journal:  RNA       Date:  2012-02-23       Impact factor: 4.942

3.  Inducible gene expression from the plastid genome by a synthetic riboswitch.

Authors:  Andreas Verhounig; Daniel Karcher; Ralph Bock
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-22       Impact factor: 11.205

4.  Evidence for widespread gene control function by the ydaO riboswitch candidate.

Authors:  Kirsten F Block; Ming C Hammond; Ronald R Breaker
Journal:  J Bacteriol       Date:  2010-05-28       Impact factor: 3.490

5.  Identification of a tertiary interaction important for cooperative ligand binding by the glycine riboswitch.

Authors:  Thanh V Erion; Scott A Strobel
Journal:  RNA       Date:  2010-11-23       Impact factor: 4.942

Review 6.  Riboswitches and the RNA world.

Authors:  Ronald R Breaker
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-02-01       Impact factor: 10.005

Review 7.  Riboswitch structure in the ligand-free state.

Authors:  Joseph A Liberman; Joseph E Wedekind
Journal:  Wiley Interdiscip Rev RNA       Date:  2011-09-28       Impact factor: 9.957

Review 8.  Themes and variations in riboswitch structure and function.

Authors:  Alla Peselis; Alexander Serganov
Journal:  Biochim Biophys Acta       Date:  2014-02-28

Review 9.  Computational analysis of riboswitch-based regulation.

Authors:  Eric I Sun; Dmitry A Rodionov
Journal:  Biochim Biophys Acta       Date:  2014-02-28

10.  Enzymatic incorporation of emissive pyrimidine ribonucleotides.

Authors:  Seergazhi G Srivatsan; Yitzhak Tor
Journal:  Chem Asian J       Date:  2009-03-02
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.