Literature DB >> 15466430

The dynamics of transposable elements in structured populations.

Grégory Deceliere1, Sandrine Charles, Christian Biémont.   

Abstract

We analyzed the dynamics of transposable elements (TEs) according to Wright's island and continent-island models, assuming that selection tends to counter the deleterious effects of TEs. We showed that migration between host populations has no impact on either the existence or the stability of the TE copy number equilibrium points obtained in the absence of migration. However, if the migration rate is slower than the transposition rate or if selection is weak, then the TE copy numbers in all the populations can be expected to slowly become homogeneous, whereas a heterogeneous TE copy number distribution between populations is maintained if TEs are mobilized in some populations. The mean TE copy number is highly sensitive to the population size, but as a result of migration between populations, it decreases as the sum of the population sizes increases and tends to reach the same value in these populations. We have demonstrated the existence of repulsion between TE insertion sites, which is established by selection and amplified by drift. This repulsion is reduced as much as the migration rate is higher than the recombination rate between the TE insertion sites. Migration and demographic history are therefore strong forces in determining the dynamics of TEs within the genomes and the populations of a species.

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Year:  2004        PMID: 15466430      PMCID: PMC1448865          DOI: 10.1534/genetics.104.032243

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  20 in total

1.  Sure facts, speculations, and open questions about the evolution of transposable element copy number.

Authors:  S V Nuzhdin
Journal:  Genetica       Date:  1999       Impact factor: 1.082

2.  Transposable elements in natural populations with a mixture of selected and neutral insertion sites.

Authors:  B Charlesworth
Journal:  Genet Res       Date:  1991-04       Impact factor: 1.588

Review 3.  Why sex and recombination?

Authors:  N H Barton; B Charlesworth
Journal:  Science       Date:  1998-09-25       Impact factor: 47.728

4.  Transposable element distribution in Drosophila.

Authors:  C Biémont; A Tsitrone; C Vieira; C Hoogland
Journal:  Genetics       Date:  1997-12       Impact factor: 4.562

5.  Transposable elements as sources of variation in animals and plants.

Authors:  M G Kidwell; D Lisch
Journal:  Proc Natl Acad Sci U S A       Date:  1997-07-22       Impact factor: 11.205

Review 6.  Genome and stresses: reactions against aggressions, behavior of transposable elements.

Authors:  C Arnault; I Dufournel
Journal:  Genetica       Date:  1994       Impact factor: 1.082

7.  Geographical invariance in population genetics.

Authors:  T Nagylaki
Journal:  J Theor Biol       Date:  1982-11-07       Impact factor: 2.691

8.  Geographical variation in insertion site number of retrotransposon 412 in Drosophila simulans.

Authors:  C Vieira; C Biémont
Journal:  J Mol Evol       Date:  1996-04       Impact factor: 2.395

9.  Horizontal transfer of hobo transposable elements within the Drosophila melanogaster species complex: evidence from DNA sequencing.

Authors:  G M Simmons
Journal:  Mol Biol Evol       Date:  1992-11       Impact factor: 16.240

10.  Molecular characteristics of diverse populations are consistent with the hypothesis of a recent invasion of Drosophila melanogaster by mobile P elements.

Authors:  D Anxolabéhère; M G Kidwell; G Periquet
Journal:  Mol Biol Evol       Date:  1988-05       Impact factor: 16.240

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  22 in total

Review 1.  What makes transposable elements move in the Drosophila genome?

Authors:  M P García Guerreiro
Journal:  Heredity (Edinb)       Date:  2011-10-05       Impact factor: 3.821

2.  A brief history of the status of transposable elements: from junk DNA to major players in evolution.

Authors:  Christian Biémont
Journal:  Genetics       Date:  2010-12       Impact factor: 4.562

3.  Population genetics models of competition between transposable element subfamilies.

Authors:  Arnaud Le Rouzic; Pierre Capy
Journal:  Genetics       Date:  2006-08-03       Impact factor: 4.562

4.  Population genetics and molecular evolution of DNA sequences in transposable elements. I. A simulation framework.

Authors:  T E Kijima; Hideki Innan
Journal:  Genetics       Date:  2013-09-03       Impact factor: 4.562

5.  Demography and weak selection drive patterns of transposable element diversity in natural populations of Arabidopsis lyrata.

Authors:  Steven Lockton; Jeffrey Ross-Ibarra; Brandon S Gaut
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-04       Impact factor: 11.205

6.  Insertional variability of four transposable elements and population structure of the midge Chironomus riparius (Diptera).

Authors:  Giampaolo Zampicinini; Piero Cervella; Christian Biémont; Gabriella Sella
Journal:  Mol Genet Genomics       Date:  2011-09-08       Impact factor: 3.291

7.  Evolutionary pathways of the tirant LTR retrotransposon in the Drosophila melanogaster subgroup of species.

Authors:  Marie Fablet; Sémi Souames; Christian Biémont; Cristina Vieira
Journal:  J Mol Evol       Date:  2007-03-27       Impact factor: 2.395

8.  The impact of genome defense on mobile elements in Microbotryum.

Authors:  Louise J Johnson; Tatiana Giraud; Ryan Anderson; Michael E Hood
Journal:  Genetica       Date:  2009-11-07       Impact factor: 1.082

9.  A branching process for the early spread of a transposable element in a diploid population.

Authors:  John M Marshall
Journal:  J Math Biol       Date:  2008-05-29       Impact factor: 2.259

Review 10.  Dynamics of transposable elements: towards a community ecology of the genome.

Authors:  Samuel Venner; Cédric Feschotte; Christian Biémont
Journal:  Trends Genet       Date:  2009-06-18       Impact factor: 11.639

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