Literature DB >> 15465057

The ring of the rhodopsin chromophore in a hydrophobic activation switch within the binding pocket.

Paul J R Spooner1, Jonathan M Sharples, Scott C Goodall, Petra H M Bovee-Geurts, Michiel A Verhoeven, Johan Lugtenburg, Arthur M A Pistorius, Willem J Degrip, Anthony Watts.   

Abstract

The current view that the beta-ionone ring of the rhodopsin chromophore vacates its binding pocket within the protein early in the photocascade has been adopted in efforts to provide structural models of photoreceptor activation. This event casts doubt on the ability of this covalently bonded ligand to participate directly in later stages involving activation of the photoreceptor and it is difficult to translate into predictions for the activation of related G protein-coupled receptors by diffusable ligands (e.g. neurotransmitters). The binding pocket fixes the formally equivalent pair of ring methyl groups (C16/C17) in different orientations that can be distinguished easily by (13)C NMR. Solid-state NMR observations on C16 and C17 are reported here that show instead that the ring is retained with strong selective interactions within the binding site into the activated state. We further show how increased steric interactions for this segment in the activated receptor can be explained by adjustment in the protein structure around the ring whilst it remains in its original location. This describes a plausible role for the ring in operating a hydrophobic switch from within the aromatic cluster of helix 6 of rhodopsin, which is coupled to electronic changes within the receptor through water-mediated, hydrogen-bonded networks between the conserved residues in G protein-coupled receptors.

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Year:  2004        PMID: 15465057     DOI: 10.1016/j.jmb.2004.08.049

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  14 in total

1.  Molecular dynamics of rhodopsin and free opsin: computer simulation.

Authors:  Kh T Kholmurodov; T B Fel'dman; M A Ostrovskii
Journal:  Neurosci Behav Physiol       Date:  2007-02

Review 2.  G protein-coupled receptor rhodopsin.

Authors:  Krzysztof Palczewski
Journal:  Annu Rev Biochem       Date:  2006       Impact factor: 23.643

3.  Crystal structure of a photoactivated deprotonated intermediate of rhodopsin.

Authors:  David Salom; David T Lodowski; Ronald E Stenkamp; Isolde Le Trong; Marcin Golczak; Beata Jastrzebska; Tim Harris; Juan A Ballesteros; Krzysztof Palczewski
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-23       Impact factor: 11.205

4.  How a small change in retinal leads to G-protein activation: initial events suggested by molecular dynamics calculations.

Authors:  Paul S Crozier; Mark J Stevens; Thomas B Woolf
Journal:  Proteins       Date:  2007-02-15

5.  Conserved water-mediated hydrogen bond network between TM-I, -II, -VI, and -VII in 7TM receptor activation.

Authors:  Rie Nygaard; Louise Valentin-Hansen; Jacek Mokrosinski; Thomas M Frimurer; Thue W Schwartz
Journal:  J Biol Chem       Date:  2010-04-15       Impact factor: 5.157

Review 6.  Molecular simulations and solid-state NMR investigate dynamical structure in rhodopsin activation.

Authors:  Blake Mertz; Andrey V Struts; Scott E Feller; Michael F Brown
Journal:  Biochim Biophys Acta       Date:  2011-08-08

7.  Location of the retinal chromophore in the activated state of rhodopsin*.

Authors:  Shivani Ahuja; Evan Crocker; Markus Eilers; Viktor Hornak; Amiram Hirshfeld; Martine Ziliox; Natalie Syrett; Philip J Reeves; H Gobind Khorana; Mordechai Sheves; Steven O Smith
Journal:  J Biol Chem       Date:  2009-01-28       Impact factor: 5.157

8.  Dynamic structure of retinylidene ligand of rhodopsin probed by molecular simulations.

Authors:  Pick-Wei Lau; Alan Grossfield; Scott E Feller; Michael C Pitman; Michael F Brown
Journal:  J Mol Biol       Date:  2007-06-26       Impact factor: 5.469

Review 9.  Retinal dynamics during light activation of rhodopsin revealed by solid-state NMR spectroscopy.

Authors:  Michael F Brown; Gilmar F J Salgado; Andrey V Struts
Journal:  Biochim Biophys Acta       Date:  2009-08-28

10.  Potential modes of interaction of 9-aminomethyl-9,10-dihydroanthracene (AMDA) derivatives with the 5-HT2A receptor: a ligand structure-affinity relationship, receptor mutagenesis and receptor modeling investigation.

Authors:  Scott P Runyon; Philip D Mosier; Bryan L Roth; Richard A Glennon; Richard B Westkaemper
Journal:  J Med Chem       Date:  2008-10-11       Impact factor: 7.446

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