Literature DB >> 15461444

On the solution structure of the T4 sliding clamp (gp45).

David Millar1, Michael A Trakselis, Stephen J Benkovic.   

Abstract

Examination by time-resolved fluorescence spectroscopy of the trimeric bacteriophage T4 clamp protein labeled across its three subunit interfaces with a fluorescence resonance energy transfer (FRET) pair indicates that the clamp exists in just one state in solution, with one open and two closed interfaces. This is in contrast to what is observed in the X-ray crystal structure. The population distribution of the trFRET distance is bimodal, giving 67% as 17 A and 33% as 42 A. This leads to the conclusion that gp45 exists in an asymmetric open state in solution. The further increase in the separation of the FRET pair in the presence of the clamp loader and ATP may be ascribed to either further opening of the open interface or the opening of a closed interface. The ramifications for replisome remodeling by this pathway are discussed.

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Year:  2004        PMID: 15461444     DOI: 10.1021/bi048349c

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  23 in total

1.  Out-of-plane motions in open sliding clamps: molecular dynamics simulations of eukaryotic and archaeal proliferating cell nuclear antigen.

Authors:  Steven L Kazmirski; Yanxiang Zhao; Gregory D Bowman; Mike O'donnell; John Kuriyan
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-16       Impact factor: 11.205

2.  Single-molecule investigation of the T4 bacteriophage DNA polymerase holoenzyme: multiple pathways of holoenzyme formation.

Authors:  R Derike Smiley; Zhihao Zhuang; Stephen J Benkovic; Gordon G Hammes
Journal:  Biochemistry       Date:  2006-07-04       Impact factor: 3.162

Review 3.  Single-molecule studies of DNA replisome function.

Authors:  Senthil K Perumal; Hongjun Yue; Zhenxin Hu; Michelle M Spiering; Stephen J Benkovic
Journal:  Biochim Biophys Acta       Date:  2009-08-07

4.  How a holoenzyme for DNA replication is formed.

Authors:  Senthil K Perumal; Wenhui Ren; Tae-Hee Lee; Stephen J Benkovic
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-17       Impact factor: 11.205

Review 5.  Replication clamps and clamp loaders.

Authors:  Mark Hedglin; Ravindra Kumar; Stephen J Benkovic
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-04-01       Impact factor: 10.005

6.  Linchpin DNA-binding residues serve as go/no-go controls in the replication factor C-catalyzed clamp-loading mechanism.

Authors:  Juan Liu; Yayan Zhou; Manju M Hingorani
Journal:  J Biol Chem       Date:  2017-08-14       Impact factor: 5.157

7.  Conformational analysis of processivity clamps in solution demonstrates that tertiary structure does not correlate with protein dynamics.

Authors:  Jing Fang; Philip Nevin; Visvaldas Kairys; Česlovas Venclovas; John R Engen; Penny J Beuning
Journal:  Structure       Date:  2014-03-06       Impact factor: 5.006

Review 8.  Understanding DNA replication by the bacteriophage T4 replisome.

Authors:  Stephen J Benkovic; Michelle M Spiering
Journal:  J Biol Chem       Date:  2017-09-25       Impact factor: 5.157

Review 9.  Processivity factor of DNA polymerase and its expanding role in normal and translesion DNA synthesis.

Authors:  Zhihao Zhuang; Yongxing Ai
Journal:  Biochim Biophys Acta       Date:  2009-07-01

Review 10.  Transcription of the T4 late genes.

Authors:  E Peter Geiduschek; George A Kassavetis
Journal:  Virol J       Date:  2010-10-28       Impact factor: 4.099

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